Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., RNA pseudouridylate synthase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  130 bits (326), Expect = 5e-35
 Identities = 96/294 (32%), Positives = 140/294 (47%), Gaps = 20/294 (6%)

Query: 20  LDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDEQRWEA 79
           L + +A    D SR++LK  L +  + V+  + T+    +  G  + +  E   + + E 
Sbjct: 28  LMEFLAAKMPDASRTKLKSLLSKRVVLVDNVITTQFNFPLQPGMKVQISKE---KGKKEF 84

Query: 80  QDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLD 139
            +  L IVYED  IIV+ K +  +      Q ++T    L  +        R  IVHRLD
Sbjct: 85  HNRLLKIVYEDAYIIVVEKMQGLLSVNTERQKERTAYTILNEYVQRSGRQHRVFIVHRLD 144

Query: 140 KDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIGRHSTKRTLM 199
           +DT+GLM+ AK    Q  L     +    R Y A+V GTM      D  +   + K   +
Sbjct: 145 RDTSGLMMFAKDEKTQRTLRDNWHEIVTDRRYVAVVEGTMEKD--YDTVVSWLTDKTLYV 202

Query: 200 SVSPM---GKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGR 256
           S S     G  ++THY+  +    ++ L L LETGR +QIRVHM  L HP++GD  YGG 
Sbjct: 203 SSSDYDDGGSKSITHYKTIKRANGYSLLELDLETGRKNQIRVHMQDLGHPIIGDGRYGGE 262

Query: 257 ARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDDMVEMTL 310
                       E +    R ALHA  L F HPVTG+ +EF  P P +  ++ L
Sbjct: 263 ------------ESLNPIGRLALHAFKLCFYHPVTGDLMEFETPYPGEFKKLFL 304