Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., ribosomal large subunit pseudouridine synthase D (RefSeq) from Shewanella sp. ANA-3

 Score =  389 bits (999), Expect = e-113
 Identities = 200/324 (61%), Positives = 242/324 (74%), Gaps = 1/324 (0%)

Query: 1   MAHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60
           M  +I L   +  +Q G RLDQA+AELF D+SR+R+KEW+L   + V+G ++ KPR KV 
Sbjct: 1   MTQEINLKSEISATQTGLRLDQALAELFPDYSRTRIKEWILSDAVYVDGVIVNKPREKVF 60

Query: 61  GGEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120
             + I + A LE+E    AQ + L+IVYEDDDI+VINK    VVHPGAG AD T++NALL
Sbjct: 61  ELQRIEINATLEEEVHAAAQAIELDIVYEDDDILVINKQAGLVVHPGAGNADGTLMNALL 120

Query: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180
            H   I  VPRAGIVHRLDKDTTGLMVVAKTV AQT LV ALQ R++TREYEAIV+GTMT
Sbjct: 121 HHCPNIEHVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVLGTMT 180

Query: 181 AGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240
           AGG +D+PIGRH TKRT M+V   GK AVTHYRVAE FR HTRLRLRLE+GRTHQIRVHM
Sbjct: 181 AGGTVDEPIGRHPTKRTHMAVHHSGKPAVTHYRVAEKFRNHTRLRLRLESGRTHQIRVHM 240

Query: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
           AY+ H L+GD  YGGR + PK A+ E  E++++F RQALHAV L+  HPVT E + + AP
Sbjct: 241 AYIGHVLVGDPVYGGRPKPPKAASPEFFEILKNFKRQALHAVRLELAHPVTCEIMSWTAP 300

Query: 301 VPDDMVEMTLALREDAKLNRTEEY 324
           +P+DMV +T ALR+D  L    EY
Sbjct: 301 IPEDMVILTKALRQDT-LEHPVEY 323