Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  122 bits (307), Expect = 9e-33
 Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 31/325 (9%)

Query: 4   QIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGE 63
           Q++L  T+ +  L QR+D  +  +     +S +   + +G++ VN   I KP  K+  G+
Sbjct: 19  QVQLI-TIDEDHLDQRIDNFLITVLKGVPKSMIYRIVRKGEVRVNKKRI-KPEYKLQIGD 76

Query: 64  VITV----QAELEDEQRWEAQ-----DLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKT 114
           V+ V     AE ++     A       L   I++ED+ +IV+NKP    VH G+G  D  
Sbjct: 77  VVRVPPVRMAEQDNRTAPSANLSRVSQLEDRILHEDNHLIVLNKPAGIAVHGGSG-VDYG 135

Query: 115 VLNALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAI 174
           V+ AL    S   +     +VHRLDKDT+G+++VAK   A   +   L+ + + ++Y A+
Sbjct: 136 VIEALR---SLRPQQKFLELVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKKMQKDYLAL 192

Query: 175 VIGTMTAGGMIDKPIGRHSTKRTLMS------VSPMGKHAVTHYRVAEHFREHTRLRLRL 228
           V G  +A    DK + +   K TL S      V+  GK + T +++ + ++  T ++   
Sbjct: 193 VKGEWSAQ---DKVVKQPLLKLTLKSGERIVRVNAEGKPSETRFKIVQRYQGCTLVQASP 249

Query: 229 ETGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEH 288
            TGRTHQIRVH  Y+ HP+  D  Y  +A         LT +        LHA  L F H
Sbjct: 250 VTGRTHQIRVHCQYMGHPIACDEKYSEQAFDDSMRALGLTRLF-------LHAAELMFIH 302

Query: 289 PVTGEELEFHAPVPDDMVEMTLALR 313
           P   E +   AP+ D++ ++   L+
Sbjct: 303 PENDEVMRVSAPLDDNLQQLLSKLK 327