Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., pseudouridine synthase (RefSeq) from Shewanella sp. ANA-3

 Score =  116 bits (291), Expect = 4e-31
 Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 24/225 (10%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPG-AGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
           L++ Y+D D+I+INKP   + +PG A       L  L   Y      P   +VHRLD  T
Sbjct: 14  LDLRYQDRDLIIINKPSGLLSNPGRAAHTFDCALTRLQRLY------PDTILVHRLDCAT 67

Query: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTA-GGMIDKPIG---RHSTKRTL 198
           +G+MV A+   A+++L    Q R   + Y A V+G +    G+ID  I     H   +  
Sbjct: 68  SGIMVFARNKKAESQLKTQFQDRQNEKVYIAEVMGGIAKDAGIIDLAIAPDPEHPPYQKT 127

Query: 199 MSVSPMG-KHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRA 257
            +    G K A+THYRV E     T + L  +TGRTHQ+RVHM  L HP+LGD  YG   
Sbjct: 128 QTPGTAGAKSALTHYRVLERRENSTLVELTPQTGRTHQLRVHMLALGHPILGDEFYGD-- 185

Query: 258 RIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
                      E+I+   R  LHA  L+F HP +G+ + F++  P
Sbjct: 186 ----------DEVIKARPRLCLHAQSLRFTHPYSGKAMHFYSKHP 220