Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., ribosomal large subunit pseudouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score =  114 bits (284), Expect = 3e-30
 Identities = 78/223 (34%), Positives = 111/223 (49%), Gaps = 29/223 (13%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPI-----AEVPRAGIVHRL 138
           L+++Y+D DIIV+NKP   +  PG   A          HY  +     AE P   IVHRL
Sbjct: 14  LDVLYQDKDIIVVNKPSGLLSVPGRDPA----------HYDSVYARVKAEHPHCQIVHRL 63

Query: 139 DKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM-TAGGMIDKPIGRHSTKRT 197
           D  T+G++VVA    A+  L R    R+ ++ Y A V G +    G +D P+      R 
Sbjct: 64  DMATSGVIVVALIRSAERELKRQFHDRETSKTYLARVAGHVKNTTGSVDYPLICDWPNRP 123

Query: 198 LMSVS-PMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGR 256
              V   +GK ++TH+ V    +  T ++L+  TGR+HQ+RVHM  L HP+LGD  Y   
Sbjct: 124 KQKVDHEIGKPSLTHFEVLSRAKRSTLVKLKPITGRSHQLRVHMMALGHPILGDGFY--- 180

Query: 257 ARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHA 299
                   + L + +    R  LHA  L  +HP TGE + F A
Sbjct: 181 -------ADPLAKSLA--PRLLLHAAELTIKHPYTGESMTFSA 214