Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) from Xanthomonas campestris pv. campestris strain 8004

 Score =  147 bits (371), Expect = 2e-40
 Identities = 79/239 (33%), Positives = 133/239 (55%), Gaps = 8/239 (3%)

Query: 9   LLALSLLF-----GCS-SSPDVVPD--VPPSQLYSEAQTALQSGTWLTAIEKLEALDSRY 60
           L+AL L+      GC   + D  PD  +P  QLY +    ++ G W  A    + L ++Y
Sbjct: 13  LIALMLVMAFVVTGCHRGAKDKNPDEGMPVEQLYGKGHGLMEKGNWAGAEASYKRLIAQY 72

Query: 61  PFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRN 120
           P+G Y+EQ  ++  YA YK       +++++RF R  PTH  + ++ Y+RGL +  +D  
Sbjct: 73  PYGPYTEQAMIETAYAQYKAGKHDDTVSSVDRFIRTYPTHRNISYLYYLRGLANSNRDTV 132

Query: 121 FMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLATA 180
           F+  ++++D   RD    + A+ DF  +  RYPNS YA DA++RM  L++  A+++L  A
Sbjct: 133 FLRRVWSLDPSRRDLSSPQQAYNDFNTVTDRYPNSRYAPDARKRMIELRDIFAQHELDNA 192

Query: 181 DFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
            +YLRR+AW++A  R   L +TYP +     ++ +  EAY  LG        +++++LN
Sbjct: 193 LYYLRRDAWVSAAGRANYLLETYPQSAFQYDAVAVLAEAYTHLGNKTLAADARRVLELN 251