Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  103 bits (256), Expect = 5e-27
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 16/227 (7%)

Query: 6   LSGLLALSLLFGCSSSPDV------VPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSR 59
           L+ +   SL+  C + PD+          PP  LY++    L +G    A  K EA+D +
Sbjct: 20  LAAIAGSSLITACQNDPDIDITKLTAETDPPDVLYNQGLANLNAGKTTEAARKFEAIDKQ 79

Query: 60  YPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDR 119
           +PF  Y+ +  +   +  Y+N      + +  R+  L P  E   +  Y++GL +  Q  
Sbjct: 80  HPFSEYARKALVMNAFVAYRNGQYQDAINSTNRYLNLYPQSEDAAYAQYIQGLAYTKQ-- 137

Query: 120 NFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLAT 179
                   I    +D  P   A    + ++ +YP+S Y +DAQ ++   +++LA  ++  
Sbjct: 138 --------IPSVTQDQRPAAKAIEAMQVVVDKYPDSEYVDDAQAKIRFARDQLAGKEMQV 189

Query: 180 ADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLT 226
             +YL R+ ++AAI+R + + + YP T    ++L   +EAY  +G+T
Sbjct: 190 GRYYLERKEYLAAISRFRTVVERYPTTNQVEEALARLVEAYYAMGVT 236