Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 283 a.a., putative lipoprotein (RefSeq) from Shewanella amazonensis SB2B

 Score =  217 bits (552), Expect = 2e-61
 Identities = 110/243 (45%), Positives = 155/243 (63%), Gaps = 5/243 (2%)

Query: 2   KYQTLSGLLALSLLFG-CSSSPD----VVPDVPPSQLYSEAQTALQSGTWLTAIEKLEAL 56
           K+   S +   +L  G CSSS      V+    P  LY++A+T+++ G +  A++ LEAL
Sbjct: 32  KFAKGSAVALFALALGACSSSGSQEDLVLSQKSPEALYAQARTSMELGNFSKAVKSLEAL 91

Query: 57  DSRYPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMA 116
           DSR+PFGA+  QVQLD+IYAYYK DD    +A I+RF RLNPTH  +D+V YMRGL +M 
Sbjct: 92  DSRFPFGAHKTQVQLDMIYAYYKLDDTPQAIANIDRFLRLNPTHPDVDYVQYMRGLVNMQ 151

Query: 117 QDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYD 176
            D    HD+ NIDR DRDP+    AF DF++L++ YPNS YA DA +RM  LKNRLA Y 
Sbjct: 152 ADSYLFHDMMNIDRTDRDPKNAMDAFKDFERLIKTYPNSKYAADAHQRMQFLKNRLARYS 211

Query: 177 LATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLM 236
           +  A++Y++  AW AA  R Q + +++P T +  ++LEI  ++Y +LG     +    +M
Sbjct: 212 IQVAEYYVKMNAWSAAAVRAQTVMESFPGTPSTERALEIMAQSYDELGQEQLKKHVLMVM 271

Query: 237 QLN 239
           Q N
Sbjct: 272 QEN 274