Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., putative lipoprotein (RefSeq) from Shewanella loihica PV-4

 Score =  232 bits (592), Expect = 5e-66
 Identities = 117/234 (50%), Positives = 158/234 (67%), Gaps = 4/234 (1%)

Query: 9   LLALSLLFGCSSSPD---VVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAY 65
           LL+L+L   CSS P+    +    P  LYS+A+T+++ G +  A+  LEALDSRYPFG +
Sbjct: 12  LLSLALA-ACSSKPEDDIELSKSSPEVLYSQARTSMELGNYSKAVRSLEALDSRYPFGPH 70

Query: 66  SEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDL 125
             QVQLDLIYAYYK DD A G+A I+RF RLNPTH+ +D+V YMRGL +M  D    HD+
Sbjct: 71  KTQVQLDLIYAYYKLDDSASGIANIDRFIRLNPTHKDIDYVYYMRGLVNMQSDNYMFHDM 130

Query: 126 FNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLATADFYLR 185
            NIDR DRDP+  + AF DF +L+++YPNS YA DAQ+RM  LKNRLA+Y +  A++Y++
Sbjct: 131 LNIDRTDRDPKAAQDAFKDFDRLIKQYPNSKYAADAQKRMQFLKNRLAKYAITVAEYYIK 190

Query: 186 REAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
             AW AA  R Q + +TYP T +  ++LEI   AY++LG     +    +MQ N
Sbjct: 191 MNAWSAAAVRAQTVLETYPGTPSTERALEIMATAYEELGQQKLKDHVLMVMQSN 244