Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., beta-barrel assembly machine (BAM) protein BamD from Caulobacter crescentus NA1000

 Score = 91.7 bits (226), Expect = 2e-23
 Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 14/239 (5%)

Query: 5   TLSGLLALSLLFGCSSSPD----VVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRY 60
           T++ +L  + + GC+        V  + P   LYS     L  G W  A++    ++ ++
Sbjct: 16  TIAAVLVAASVAGCAGKAKKPTLVYEERPVELLYSTGADRLDRGNWNEAVDYFREVERQH 75

Query: 61  PFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRN 120
           P+  +S +  L   YA+Y  +  A  +   +RF  L P +    +  Y++ + +  Q   
Sbjct: 76  PYSEWSRRSILMTGYAHYMGNQYAEAIGDADRFISLYPGNPSAQYAFYLKAICYFEQ--- 132

Query: 121 FMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLATA 180
                  I   +RD    + A A  + ++QRYPN+ YA DA+ ++  + ++LA  ++A  
Sbjct: 133 -------IVDVNRDQAATEQALAALRDVVQRYPNTEYATDARLKIDMVNDQLAGKEMAIG 185

Query: 181 DFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
            +YL+    +AAI R + + + +  T    ++L   +EAY  +GL +  +R   ++  N
Sbjct: 186 RWYLKNGQTLAAIGRFKAVIERHQTTSHTPEALFRLVEAYLTIGLNEEAKRNGAVLGYN 244