Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., putative lipoprotein (RefSeq) from Shewanella sp. ANA-3

 Score =  239 bits (610), Expect = 4e-68
 Identities = 116/228 (50%), Positives = 154/228 (67%), Gaps = 3/228 (1%)

Query: 15  LFGCSSSP---DVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQL 71
           L  CSSSP   D+     P  LYS+A+T+++ G +  A+  LEALDSR+PFG +  QVQL
Sbjct: 46  LSACSSSPEDNDIAAKTSPDVLYSQARTSMELGNYSKAVRSLEALDSRFPFGPHKTQVQL 105

Query: 72  DLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRR 131
           DLIYAYYK DD+A G+A I+RF RLNPTH  +D+V YMRGL +M  D    HD+ NIDR 
Sbjct: 106 DLIYAYYKMDDVASGIANIDRFIRLNPTHPNIDYVYYMRGLVNMQADSYLFHDMLNIDRT 165

Query: 132 DRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLATADFYLRREAWIA 191
           DRDP+  + AF DF +L++ YPNS YA DAQ+RM +LKNRLA+Y +  A++Y++  AW A
Sbjct: 166 DRDPKNAQDAFKDFDRLIKTYPNSKYAADAQKRMLSLKNRLAKYSIQVAEYYIKMNAWSA 225

Query: 192 AINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
           A  R Q + +TYP T +  ++LEI  EAY +LG     +    +MQ N
Sbjct: 226 AAVRAQSVLETYPGTPSTERALEIMAEAYGELGQNQLKQNVLMVMQAN 273