Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 84.0 bits (206), Expect = 6e-21
 Identities = 89/328 (27%), Positives = 135/328 (41%), Gaps = 28/328 (8%)

Query: 19  LSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLM 76
           +SLM +     QA    L+VY W D IAP  V  + K++G+ V    FD+++  E  LL 
Sbjct: 21  MSLMGVMAGAVQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLLA 80

Query: 77  LKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGT------HAV 128
            KS    +DI+V  N       +  V++  D + LPN  N +   L+A         HA 
Sbjct: 81  GKS---GYDIVVPSNNFLAKQIKAGVYQKLDKSKLPNWKNLNTDLLKAVSVSDPGNEHAF 137

Query: 129 PYFWGSVGIAYRKSLF------DKPPTQWS---EVVDIAPAHRGRVGMLKDSVETLLPAL 179
           PY WGS+GI +           D P   W    +  + A      +  L    E +  AL
Sbjct: 138 PYMWGSIGIGFNPEKVKAALGADAPTNSWDLLFKPENAAKLKACGISFLDSPTEMIPVAL 197

Query: 180 YMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYS 239
           + L     +     L +A  L     P I  Y +   Y+ S     N+ +AV YSGD Y 
Sbjct: 198 HYLGYPTDSQDKKQLAEAEALFLKIRPSI-GYFHSSKYI-SDLANGNICVAVGYSGDIYQ 255

Query: 240 LN----RFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAE 295
                          +++P+     + D +A+   + N   A  F+ FL KP+I A   +
Sbjct: 256 AKSRAAEAGGKVKVSYNIPKEGAGSFFDMVAIPKDAENVEGAYKFMTFLQKPEIMAEITD 315

Query: 296 YIRAASPNYKARALLPVEHREDLSIYLP 323
            +   + N  +  L+  E   D  IY P
Sbjct: 316 TVSFPNGNAASTPLVSKEITSDPGIYPP 343