Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 80/334 (23%), Positives = 146/334 (43%), Gaps = 26/334 (7%)

Query: 15  IKRFLSLMVLNTV---CYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDE 71
           +KRF++  V   +     QA    L VY W D I P  +E +  +      ++   + +E
Sbjct: 4   LKRFMAPAVCAALLCGAVQAEERTLRVYNWFDYITPKALEDFKAQNSQVKLVYDIFDTNE 63

Query: 72  RSLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGTH--- 126
                L +    +D++V  NV         VF+  D + LPN  + DP  ++    +   
Sbjct: 64  ALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWNHLDPKLMKLIEANDPG 123

Query: 127 ---AVPYFWGSVGIAY-----RKSLFDKPPTQWSEVV----DIAPAHRGRVGMLKDSVET 174
              AVPY +G++ I +     + +L D  P    +++    +I+   +  V +L    E 
Sbjct: 124 NKFAVPYMYGTILIGFNPDKVKAALGDNAPVDSWDLIFKEENISKLKQCGVALLDSPSEI 183

Query: 175 LLPALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYS 234
           L  AL  L   P +       +A  L+    PHI TY +   Y+      D + +AV YS
Sbjct: 184 LPLALQHLGLDPNSKKPADYAKAEALMMKIRPHI-TYFHSSKYMADIANGD-ICVAVGYS 241

Query: 235 GDH-YSLNRFFNTQDW---DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIA 290
           G    + NR    ++    D  +P+    +W D +A+   + N   A AF+++L++P + 
Sbjct: 242 GSFSQAANRAKEAKNGVTVDMRLPKEGAPIWFDMLAIPKGAANPGDAYAFINYLLQPQVI 301

Query: 291 AINAEYIRAASPNYKARALLPVEHREDLSIYLPE 324
           A  ++++   +PN  A  ++    R + ++Y  E
Sbjct: 302 APVSDFVGYPNPNKDATDMVDPAIRNNPNLYPTE 335