Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N1B4

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 94/333 (28%), Positives = 144/333 (43%), Gaps = 28/333 (8%)

Query: 19  LSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLM 76
           LSL+       QA+   L VY W D IAP  V+ +  +TG+ V    FD+++  E  LL 
Sbjct: 11  LSLLGAMATGAQANDKVLRVYNWSDYIAPDTVKKFEDETGIRVTYDVFDSNETLEARLLA 70

Query: 77  LKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGT------HAV 128
            KS    +DI+V  N       +  V++  D + LPN  N +P+ L+          HA 
Sbjct: 71  GKS---GYDIVVPSNSFLAKQIKAGVYQPLDKSKLPNWKNLNPVLLKNASASDPDNGHAF 127

Query: 129 PYFWGSVGIAYRKSLF------DKPPTQWSEVVDIAPAHRGR---VGMLKDSVETLLPAL 179
           PY WGS+GI Y  +        D P   W  +     A + +   +  L    E L  AL
Sbjct: 128 PYMWGSIGIGYNPAKVKEVLGTDAPVNSWDLLFKPENAAKLKACGISFLDSPTEMLPAAL 187

Query: 180 YMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYS 239
           + L     +     + +A  L     P +  Y +   Y+ S     N+ +AV YSGD   
Sbjct: 188 HYLGYPVNSQDKAQIAEAEALFMKIRPSV-AYFHSSKYI-SDLANGNICVAVGYSGDVLQ 245

Query: 240 LN-RFFNTQDW---DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAE 295
              R     D    ++S+P+     + D +A+   + N   A  F++FLM+PDI A    
Sbjct: 246 AKARAKEAGDKVKIEYSIPKEGAGSFYDMVAIPRDATNVDNAYLFMNFLMRPDIIAEVTN 305

Query: 296 YIRAASPNYKARALLPVEHREDLSIYLPEQRLA 328
            I  ++ N  A  L+    R+D   Y P+  +A
Sbjct: 306 NIGYSNANAAATPLVDEAIRDDPGSYPPQAVMA 338