Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N1B4

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 95/343 (27%), Positives = 146/343 (42%), Gaps = 28/343 (8%)

Query: 19  LSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLM 76
           +SLM +     QA    L+VY W D IAP  V+ +  ++G+ V    FD+++  E  LL 
Sbjct: 16  MSLMGVMAGAVQADDKVLHVYNWSDYIAPDTVKKFEAESGIKVVYDVFDSNETLEAKLLA 75

Query: 77  LKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGT------HAV 128
            KS    +DI+V  N       +  V++  D + LPN  N +   L+A         HA 
Sbjct: 76  GKS---GYDIVVPSNNFLAKQIKAGVYQKLDKSKLPNWKNLNTDLLKAVSVSDPGNEHAF 132

Query: 129 PYFWGSVGIAYRKSLF------DKPPTQWSEVVDIAPAHRGR---VGMLKDSVETLLPAL 179
           PY WGS+GI +           D P   W  +     A + +   +  L    E +  AL
Sbjct: 133 PYMWGSIGIGFNPDKVKAALGADAPTNSWDLLFKPENAAKLKSCGISFLDSPTEMIPVAL 192

Query: 180 YMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYS 239
           + L     +     L +A  L     P +  Y +   Y+ S     N+ +AV YSGD Y 
Sbjct: 193 HYLGYPTDSQDKKQLAEAEALFLKIRPSV-GYFHSSKYI-SDLANGNICVAVGYSGDIYQ 250

Query: 240 LN-RFFNTQDW---DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAE 295
              R     D     +++P+     + D +A+   + N   A  F+ FL KP+I A    
Sbjct: 251 AKARAAEAGDKVKVSYNIPKEGAGSFYDMVAIPKDAENVEGAYKFMTFLQKPEIMAEITN 310

Query: 296 YIRAASPNYKARALLPVEHREDLSIYLPEQRLAEGIIDSELSA 338
            +R  + N  A  L+  E   D  IY P + LA+    ++L A
Sbjct: 311 AVRFPNGNAAATPLVEKEITADPGIYPPAEVLAKLYAIADLPA 353