Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  108 bits (270), Expect = 2e-28
 Identities = 97/337 (28%), Positives = 153/337 (45%), Gaps = 27/337 (8%)

Query: 16  KRFLSLMVLNTVCYQASALE--LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERS 73
           K  L++ +  TV   A A E  L+VY W D IA   +E + K+TG+ V    FD+++   
Sbjct: 6   KTLLAMTLAGTVAGAAQAQEKVLHVYNWSDYIAEDTLENFTKETGIKVVYDVFDSNEVLE 65

Query: 74  LLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC------GT 125
             +L      +D++V  N       +  VF+  D + LPN  N D   L+A         
Sbjct: 66  AKLLAGSS-GYDVVVPSNPFLAKQIKAGVFQKLDKSKLPNWENLDKDLLKALEPSDPGNQ 124

Query: 126 HAVPYFWGSVGIAY-----RKSLFDKPPTQWSEVV----DIAPAHRGRVGMLKDSVETLL 176
           +++PY WG++GI Y     +  L D  P    ++V    +I       V  L    E L 
Sbjct: 125 YSIPYMWGTIGIGYNVDKVKAVLGDNAPVDSWDLVFKPENIEKLKSCGVAFLDSPTEMLP 184

Query: 177 PALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGD 236
            AL+ L  +P +   D L++A  L     PH+  Y +   Y+ S     N+ +A+ YSGD
Sbjct: 185 AALHYLGYAPDSGKADELKKAEDLFMQIRPHV-AYFHSSKYI-SDLANGNICVAIGYSGD 242

Query: 237 HYS----LNRFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAI 292
            Y          N  +  + +P+     + D +AV + + N   A AF+++LMKPD+ A 
Sbjct: 243 IYQGKSRAEEAANGVNVGYKIPKEGAGSFFDMLAVPADAKNVESAHAFINYLMKPDVMAS 302

Query: 293 NAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAE 329
              Y++  + N  A  LL    R D  IY P Q + +
Sbjct: 303 ITNYVQFPNGNAAATPLLDEAIRTDEGIY-PSQAVLQ 338