Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  112 bits (280), Expect = 2e-29
 Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 31/333 (9%)

Query: 31  ASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLMLKSVQLPFDIMV 88
           A A  +++Y W D I  + +E + K+TG+      FD+++  E  LL  +S    +D++V
Sbjct: 20  AQAASVHIYNWSDYIGETTLEEFEKETGIKPVYDVFDSNETLEGKLLAGRS---GYDVVV 76

Query: 89  LDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC------GTHAVPYFWGSVGIAY- 139
             N       R   F+  D + LPN  + DP  L+          HA PY WG+ GI Y 
Sbjct: 77  PSNHFLGKQIRAGAFQALDKSKLPNWEHLDPALLKQLQKNDPGNAHAAPYLWGTNGIGYN 136

Query: 140 ----RKSLFDKPPTQWSEVVDIAPAHRGRVGM----LKDSVETLLPA-LYMLNASPITDS 190
               + +L       WS + +  P +  ++        DS + ++PA L  L   P +++
Sbjct: 137 VEKVKAALGVDEIDSWSVIFE--PENAAKLASCGIAFLDSADEMIPAMLNYLGLDPNSEN 194

Query: 191 IDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSLNRFFNTQ--- 247
               ++A   L A  PH+  Y +   Y+ S     N+ +A  +SGD +            
Sbjct: 195 AADYQKAEEKLLAVRPHV-RYFHSSKYI-SDLANGNICVAAGFSGDVFQAAARAEEAGKG 252

Query: 248 -DWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKA 306
            +  +++P     LW D +A+ + + N  +A AF+++L++P++ A  ++Y+  A+PN KA
Sbjct: 253 IEIAYAIPAEGANLWFDMLAIPADASNVEEAHAFINYLLRPEVIAAVSDYVGYANPNLKA 312

Query: 307 RALLPVEHREDLSIYLPEQRLAEGIIDSELSAK 339
             L+  E RED S+Y P++ L    + +EL  K
Sbjct: 313 GELMDQEVREDASVYPPQEVLDRLYVSAELPPK 345