Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  195 bits (496), Expect = 1e-54
 Identities = 110/327 (33%), Positives = 180/327 (55%), Gaps = 5/327 (1%)

Query: 36  LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVLDNVSAF 95
           L +  WE+ ++ +V++ W  +TGV +   +FD+ D+R  ++ K      DI + + +S+ 
Sbjct: 36  LTLLTWEEYLSEAVIKRWQAETGVEIRQVYFDSGDKRDEILAKPDH-QIDIALTELISST 94

Query: 96  IFSRQNVFEDLT--ALPNRANNDPMWLQACGTHAVPYFWGSVGIAYRKSLFDKPPTQWSE 153
            F  + + + L   +L       P W  +CG ++VPY WG++GIAYR    D  P  W++
Sbjct: 95  RFGARGLLQPLDEPSLAELHRAAPRWRDSCGRYSVPYLWGTLGIAYRSDRLDFVPHSWAD 154

Query: 154 VVDIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEY 213
           ++  A      + M++D  + L   L +L  S  T   D L+ A+ LL + +  +LTYEY
Sbjct: 155 LLRPARPDEPHIIMMEDHEDILASPLLLLKHSINTSDNDELKAAFELLVSQSEAVLTYEY 214

Query: 214 VLSYVRSHPQTDNLHMAVSYSGDHYSLNRF--FNTQDWDFSVPEGRPYLWVDCMAVNSVS 271
           V++ +RS    +   MA++YSGD   LN+      + W + VPE    LWVDC++V S++
Sbjct: 215 VITALRSQRHLERADMALAYSGDQQVLNQVEGVEGEPWRYVVPEEGTLLWVDCLSVPSIA 274

Query: 272 PNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAEGI 331
            N   A  FL+FL +PDIA +NA  +  A+PN  A+ALLP E R DL+IY  E+ LA   
Sbjct: 275 RNKPLAYRFLNFLNRPDIAVLNAAELGVATPNAAAQALLPEEIRNDLTIYPAEKVLARSQ 334

Query: 332 IDSELSAKNLSLRAKIISSVTYQYEAK 358
           +      +    R +IIS++   ++A+
Sbjct: 335 VYEMRPLEATQTRRRIISALINAHDAR 361