Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., putrescine-binding periplasmic protein from Sinorhizobium meliloti 1021

 Score =  216 bits (549), Expect = 9e-61
 Identities = 116/337 (34%), Positives = 188/337 (55%), Gaps = 5/337 (1%)

Query: 19  LSLMVLNTVCYQASALE-LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLML 77
           +S+ +   +C  AS  E LN+ +WED I   +++ W +KTGVS+   +FD+DD R  ++ 
Sbjct: 7   ISVFLATLLCASASRAETLNLLIWEDYIDEGLIDRWTEKTGVSIRQINFDSDDARDEILA 66

Query: 78  KSVQLPFDIMVLDNVSAFIFSRQNVFEDL--TALPNRANNDPMWLQACGTHAVPYFWGSV 135
              +   D++++D   A +F R+ + E L  T LP   +  P W ++C  + +PYFWG+V
Sbjct: 67  DPGR-NIDLVIVDENGATLFGRKGIIEPLSETNLPALEDYAPEWRKSCAGYGLPYFWGTV 125

Query: 136 GIAYRKSLFDKPPTQWSEVVDIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSIDTLR 195
           GI YR  +   PPT W +++  APA R  + M  D  E  +P L +L AS   D   TL+
Sbjct: 126 GILYRSDMVTPPPTSWRDMMRPAPALRKHIAMFADHSEIFVPPLMLLGASVNADDTPTLK 185

Query: 196 QAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSLN-RFFNTQDWDFSVP 254
            A+ LL    P +LTY+YV++ ++      N+++A+ YSGD + LN +      W +SVP
Sbjct: 186 AAFALLKTQAPFVLTYDYVVTSIQDPALAGNIYLALGYSGDQHVLNSKAGKAGLWRYSVP 245

Query: 255 EGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPVEH 314
           +     W+DC +V + SP   +A  FL+F+  P+ AA NA  +   + +  A  LLP   
Sbjct: 246 KEGTLSWLDCFSVTAASPRKQRALEFLNFIGSPEAAAANAIALNMPTASNAALKLLPDTM 305

Query: 315 REDLSIYLPEQRLAEGIIDSELSAKNLSLRAKIISSV 351
           R D  IY P + +A+     ELS +++  R +II+++
Sbjct: 306 RSDPEIYPPTEIMAKNQHHQELSVRSIEARRRIINTL 342