Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 24/315 (7%)

Query: 36  LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLMLKS---VQLPFDIMVLD 90
           + VY W D IA   +E + K+TG+ V    FD ++  E  LL  +S   + +P    +  
Sbjct: 29  VRVYNWSDYIAEDTLENFQKETGIRVIYDVFDTNEVLEAKLLSGRSGYDLVVPSAHFLAK 88

Query: 91  NVSAFIFSRQNVFEDLTALPNRANNDPMWLQAC---GTHAVPYFWGSVGIAYRKSLF--- 144
            + A  F + +  + LT   +   N    LQ       HAVPY WG+ GI +  +     
Sbjct: 89  QIKAGAFMKLDKSK-LTNEKHLNKNLMTQLQKSDPGNEHAVPYLWGTTGIGFNVAKVKEV 147

Query: 145 ---DKPPTQWSEVVDIAPAHRGR---VGMLKDSVETLLPALYMLNASPITDSIDTLRQAY 198
              D P   W  + + A A +     + +L    E L PAL  L  +P +       +A 
Sbjct: 148 LGEDAPVDSWDLIFNPANAEKLAKCGIAVLDSPDEILPPALNYLGLNPNSTDPADYEKAG 207

Query: 199 RLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGD----HYSLNRFFNTQDWDFSVP 254
            +L    P+ L Y +   Y+ S      +  A+ +SGD            N Q  D+ +P
Sbjct: 208 EVLLKIRPY-LKYFHSSRYI-SDLANGEICAAIGWSGDVLQAQARAEEAGNGQQVDYRIP 265

Query: 255 EGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPVEH 314
           +    LW D MA+ + + N   A  F+++LM+P++ A  + Y+  A+ N  +  LL  E 
Sbjct: 266 KEGAPLWFDMMAIPADAANADNALTFMNYLMRPEVIASISNYVAYANANDGSNPLLDEEV 325

Query: 315 REDLSIYLPEQRLAE 329
            ++ ++Y  E+ LA+
Sbjct: 326 AKNPAVYPSEETLAK 340