Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., extracellular solute-binding protein, family 1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 35/364 (9%)

Query: 12  SQMIKRFLSLMVLNTVCYQASALE---LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDN 68
           S +++    + V   +   A+A E   LNVY W D IA   +  +  +TG+ VN   +D+
Sbjct: 3   SPVLRALSGVAVALLIAGPAAAAEDKVLNVYNWSDYIAEDTLAKFQAETGIKVNYDVYDS 62

Query: 69  DD--ERSLLMLKS---VQLPFDIMVLDNVSAFIFSRQNVFEDLTALPNRANNDPMWL--- 120
           ++  E  LL   S   + +P D  +   + A I  +     D   +PN AN DP      
Sbjct: 63  NELLESKLLAGSSGYDIVVPTDHTLSRLIQAGIVQKL----DKAKIPNLANLDPKLTARA 118

Query: 121 ---QACGTHAVPYFWGS--VGIAYRKSLFDKPPTQWSEVVDIA--PAHRGRVG-----ML 168
               A   H+V Y WG+  +GI   K      P    +  D+   P +  ++      +L
Sbjct: 119 AAYDADNAHSVIYEWGTNGLGINIDKVRAALGPDVKLDSFDLLFKPEYAEKLASCGIHVL 178

Query: 169 KDSVETLLPALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLH 228
             + E    A   L   P +     L +A  L     P+I  + +   ++ +    D + 
Sbjct: 179 DSAAEVFSVARNYLGLEPNSTDPKDLEKATALWMGVRPYIQKF-HSSEFINALANGD-IC 236

Query: 229 MAVSYSGDHYSLNRFFNTQDW------DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLD 282
           +A  YSGD +        ++       D+ +P+    +W D MAV + +P+   A  F+D
Sbjct: 237 VAFGYSGDIFQAQAQARAKEAANGVKIDYIIPKEGTLIWFDLMAVPADAPHPENAHKFID 296

Query: 283 FLMKPDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAEGIIDSELSAKNLS 342
           F+++P I+A  + Y+  A+ N KA  LL    R + SIY  ++ +    I    S +   
Sbjct: 297 FILQPQISADISNYVWYANANSKATELLDEAVRTNPSIYPTQEVMDRLFIQKTASPEMER 356

Query: 343 LRAK 346
           LR +
Sbjct: 357 LRTR 360