Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., polyamine ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 42/333 (12%)

Query: 19  LSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLM 76
           ++L V  T+   A    +N Y W + +AP V+E + ++TG+ V    FD ++  E  LL 
Sbjct: 17  IALSVSLTLPGWAQDRTVNFYNWSNYVAPGVIEDFTRETGIKVVYDTFDANETLETKLLA 76

Query: 77  LKSVQLPFDIMVLDNVSAFIFSRQ---NVFE--DLTALPNRAN-----NDPMWLQACGTH 126
            KS    +D++V    +A+   RQ    VF+  D + LPN  N      D + L   G  
Sbjct: 77  GKS---GYDVVV---PTAYFLQRQITAGVFQKLDKSKLPNLKNAWDFVTDRLALYDPGNQ 130

Query: 127 -AVPYFWGSVGIAYR----KSLFDKPPT--QWSEVV---DIAPAHRGRVGMLKDSVETLL 176
            AV Y WG+ GI Y     K +  +      W  +    ++A      V ML DS + +L
Sbjct: 131 FAVNYMWGTTGIGYNVAAAKRILGEGAVIDSWEMIFKPENLAKFKECGVHML-DSADDIL 189

Query: 177 PA-LYMLNASPITDSIDTLRQAYRLLDAANPHILTY---EYVLSYVRSHPQTDNLHMAVS 232
           PA L  L   P + + D L +A  ++    P +  +   EY+ +       T  + + V+
Sbjct: 190 PAALTYLGRDPNSTNKDDLEKAAEVVGKVQPSVRKFHSSEYLNALA-----TGEICLVVA 244

Query: 233 YSGDHYSLN----RFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPD 288
           +SGD            N  +  +++P+    ++ D +A+ + + N  +A   ++FL +PD
Sbjct: 245 WSGDIKQAQSRAAEAHNGVEIGYAIPKEGAQMFFDNLAIPADAKNVAEAHELINFLYRPD 304

Query: 289 IAAINAEYIRAASPNYKARALLPVEHREDLSIY 321
           IAA N++++  A+ N  ++  +      D +IY
Sbjct: 305 IAARNSDFLSYANGNKTSQDFINPRVLNDKAIY 337