Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa PA14

 Score =  103 bits (256), Expect = 9e-27
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 23/337 (6%)

Query: 30  QASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVL 89
           QA    L++Y W D IAP+ ++ + K++G+ V+   FD+++     ++ S    +DI+V 
Sbjct: 23  QAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLV-SGHSGYDIVVP 81

Query: 90  DNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC------GTHAVPYFWGSVGIAY-- 139
            N       +   F+  D + LPN  N DP  L+          +AVPY WG+ GI Y  
Sbjct: 82  SNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNV 141

Query: 140 ---RKSLFDKPPTQWS---EVVDIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSIDT 193
              ++ L D+P   W+   E  ++    +  V  +    E L  AL  L   P T     
Sbjct: 142 AKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKD 201

Query: 194 LRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSLNRFFNTQ----DW 249
            ++A  +L    P++ +Y +   Y+ S     N+ +A  YSGD +             D 
Sbjct: 202 YKKAEEVLTKVRPYV-SYFHSSKYI-SDLANGNICVAFGYSGDVFQAAARAEEAGKGIDI 259

Query: 250 DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARAL 309
            + +P+    LW D MA+ + +     A AF+D+L++P++ A  ++Y+  A+    AR L
Sbjct: 260 QYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPL 319

Query: 310 LPVEHREDLSIYLPEQRLAEGIIDSELSAKNLSLRAK 346
           +     +   +Y P+  L +  + + L AK L L+ +
Sbjct: 320 MDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTR 356