Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 84/335 (25%), Positives = 155/335 (46%), Gaps = 30/335 (8%)

Query: 13  QMIKRFLSLMVLNTVCYQASALE----LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDN 68
           +++K+  +L ++    + +S +     + VY W D IA   +  + K+TG+ V    FD+
Sbjct: 2   KLLKKMTTLALVTAGVFTSSVVSAEEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFDS 61

Query: 69  DDERSLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGT- 125
           ++     +L S +  +DI+V  N       +   F+  D + L N  N +P  ++   T 
Sbjct: 62  NEVVEAKLL-SGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLETA 120

Query: 126 -----HAVPYFWGSVGIAYRKS-----LFDKPPTQWSEVVDIAPAHRGRVGM----LKDS 171
                HAVPY WG+ GI Y ++     L +  P    E++   P +  ++      L DS
Sbjct: 121 DPRNEHAVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELI-FNPKYAEKIAKCGFSLLDS 179

Query: 172 VETLLP-ALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMA 230
            + +LP A+  L   P +   +   +A  ++    P + TY +   Y+      D + +A
Sbjct: 180 ADEMLPMAMIYLGLDPNSTKSEDYAKAGEVMAKIRPFV-TYFHSSRYITDLANGD-ICVA 237

Query: 231 VSYSGDHYSL----NRFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMK 286
             YSGD +          N     +++P+    LW D +A+ + + N   A  F+++L++
Sbjct: 238 FGYSGDVFQAAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLR 297

Query: 287 PDIAAINAEYIRAASPNYKARALLPVEHREDLSIY 321
           P++ A    Y+  A+PN  A+ L+  E R D +IY
Sbjct: 298 PEVIAPITNYVAYANPNVPAQELVDEEIRNDAAIY 332