Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.9 bits (224), Expect = 5e-23
 Identities = 86/327 (26%), Positives = 152/327 (46%), Gaps = 28/327 (8%)

Query: 24  LNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLP 83
           L +V  QA  + + +Y W D IA   +E + K+TG+ V    FD+++     +L S +  
Sbjct: 18  LASVAVQAEEV-VRMYNWSDYIAEDTLENFKKETGIRVIYDVFDSNEVVEAKLL-SGRSG 75

Query: 84  FDIMVLDNVSAFIFSRQNVFE--DLTALPN--RANNDPMWL----QACGTHAVPYFWGSV 135
           +DI+V  N       +   F+  D + L N    N D M L         +AVPY WG+ 
Sbjct: 76  YDIVVPSNHFLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLEKADPGNQYAVPYLWGTN 135

Query: 136 GIAYRKSLF------DKPPTQWSEVVDIAPAHRGRVGM----LKDSVETLLP-ALYMLNA 184
           GI Y  +        D PP    E++   P +  ++      + DS + ++P A+  L  
Sbjct: 136 GIGYNINKVKAAVGEDAPPFNSMELI-FNPKYAEKISKCGFAMLDSADDMVPQAMIYLGL 194

Query: 185 SPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSL---- 240
            P +   +   +A  LL+   P++ TY +   Y+      D + +A  +SGD +      
Sbjct: 195 DPNSTKAEDYEKAGELLEKIRPYV-TYFHSSRYISDLANGD-ICVAYGFSGDVFQAAARA 252

Query: 241 NRFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAA 300
           +   N     +S+P+    LW D +A+ + + N   A   +++L++P++ A  + Y+  A
Sbjct: 253 DEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLRPEVIAPISNYVAYA 312

Query: 301 SPNYKARALLPVEHREDLSIYLPEQRL 327
           +PN  A+ L+    R D +IY P++ L
Sbjct: 313 NPNDLAQPLVDEAIRNDPAIYPPKEVL 339