Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotF from Klebsiella michiganensis M5al

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 33/336 (9%)

Query: 20  SLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDE-RSLLMLK 78
           +LM ++     A    L+VY W D IAP  V  + K+TG+ V    FD+++     LM  
Sbjct: 16  ALMAVSAGSLAAEQKTLHVYNWSDYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAG 75

Query: 79  SVQLPFDIMVLDNVSAFIFSRQ---NVFE--DLTALPNRANNDPMWLQACGTH------A 127
           S    FD++V    SA    RQ    VF+  D + LPN  N DP  L+    H      A
Sbjct: 76  STG--FDLVV---PSASFLERQLAAGVFQPLDKSKLPNWKNLDPEVLKLVAKHDPDNKYA 130

Query: 128 VPYFWGSVGIAYR----KSLF--DKPPTQWSEVV---DIAPAHRGRVGMLKDSVETLLPA 178
           +PY W + GI Y     K++   D P   W  V+   ++       V  L    E     
Sbjct: 131 IPYLWATTGIGYNIDKVKAVLGKDAPLDSWDLVMKPENLEKLKSCGVSFLDAPEEIFATV 190

Query: 179 LYMLNASPITDSIDTLR-QAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDH 237
           L  L   P +   D     A  LL    P+I  Y +   Y+      D + +A+ ++GD 
Sbjct: 191 LNYLGKDPNSSKADDYTGPATDLLLKLRPNI-RYFHSSQYINDLANGD-ICVAIGWAGDV 248

Query: 238 Y-SLNRFFNTQDW---DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAIN 293
           + + NR    ++     + +P+     + D  A+ + + N  +A  FL++LM+PD+ A  
Sbjct: 249 WQAANRAKEAKNGVNVSYFIPKEGALAFFDVFAMPADAKNKDEAYQFLNYLMRPDVIAHI 308

Query: 294 AEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAE 329
           ++++  A+ N  +  L+  E R + +IY P    A+
Sbjct: 309 SDHVYYANGNKASLPLVSEEIRNNPAIYPPADVFAK 344