Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 86.7 bits (213), Expect = 9e-22
 Identities = 75/313 (23%), Positives = 143/313 (45%), Gaps = 17/313 (5%)

Query: 13  QMIKRFLSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDER 72
           +++   + L++   V   A    LNV+ W + +  +V++ + K+TG+ V    +++++  
Sbjct: 3   RLLATVVMLLLWTGVAVSAEPKVLNVFNWSEYVPQTVLDRFTKETGIKVVYTTYESNEAM 62

Query: 73  SLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC----GTH 126
              +       +DI+V       +  +  +    D   L N AN DP  L          
Sbjct: 63  YAKIKLLRGKGYDIVVPSTYFIDMMRKDGLLAKIDRAKLTNYANLDPRVLHQPFDPQNEF 122

Query: 127 AVPYFWGSVGIAYRKSLFDKPP-TQWSEVVDIAPAHRGRVGMLKDSVETLLPALYMLNAS 185
           +VPY WG+ G+   + + D    + W+++    P  +G V +  D  +T   AL  L  S
Sbjct: 123 SVPYMWGNTGLMVNRKVVDPATISSWNDL--FRPEFKGGVILSDDLRDTFGIALKALGYS 180

Query: 186 PITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHY-SLNRFF 244
             + S   ++ AY  L    P +  ++  ++  +     + +   +S++GD + ++N   
Sbjct: 181 VNSTSEAEIKAAYEWLLKLKPSVRVFD--VTATKQAFIAEEVKGGMSWNGDAFIAMNE-- 236

Query: 245 NTQDWDFSVP-EGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPN 303
              D  F  P EG P LWVD +A+   + +   A  F+DFL++PDIA +  E    ++PN
Sbjct: 237 -NPDLAFVYPKEGLP-LWVDSLAIPIGAEHKDNAHKFIDFLLRPDIAKLCVEEYNYSTPN 294

Query: 304 YKARALLPVEHRE 316
             A+ +L   H +
Sbjct: 295 LAAQKILDARHAQ 307