Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., extracellular solute-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score = 90.1 bits (222), Expect = 9e-23
 Identities = 84/330 (25%), Positives = 156/330 (47%), Gaps = 35/330 (10%)

Query: 24  LNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLMLKS-- 79
           L +V  QA  + + VY W D IA   +E + K+TG+ V    FD+++  E  LL  +S  
Sbjct: 39  LASVAAQAEEV-VRVYNWSDYIAEDTLENFKKETGIRVIYDVFDSNEVLEAKLLSGRSGY 97

Query: 80  -VQLPFDIMVLDNVSAFIF-----SRQNVFEDLTA--LPNRANNDPMWLQACGTHAVPYF 131
            + +P +  +   + A  F     S+ + F++L A  +      DP        +AVPY 
Sbjct: 98  DIVVPSNHFLAKQIKAGAFKPLDRSKLSNFKNLNADLMKQLEKADPG-----NQYAVPYL 152

Query: 132 WGSVGIAY-----RKSLFDKPPTQWSEVVDIAPAHRGRVGM----LKDSVETLLP-ALYM 181
           WG+ GI Y     + ++ +  P    E++   P +  ++      + DS + ++P A+  
Sbjct: 153 WGTNGIGYNIDKVKAAVGEDAPFDSMELI-FNPKYAEKISKCGFAMLDSADDMVPQAMIY 211

Query: 182 LNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSL- 240
           L   P +   +   +A  LL+   P++ TY +   Y+      D + +A  +SGD +   
Sbjct: 212 LGLDPNSTKAEDYEKAGELLEKIRPYV-TYFHSSRYISDLANGD-ICVAFGFSGDVFQAA 269

Query: 241 ---NRFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYI 297
              +   N     +S+P+    LW D +A+ + + N   A   +++L++P++ A  + Y+
Sbjct: 270 ARADEAGNGNKIGYSIPKEGANLWFDMLAIPADAANVENAHKLINYLLRPEVIAPISNYV 329

Query: 298 RAASPNYKARALLPVEHREDLSIYLPEQRL 327
             A+PN  A+ L+    R D +IY P++ L
Sbjct: 330 AYANPNDPAQPLVDEAIRNDPAIYPPKEVL 359