Pairwise Alignments

Query, 791 a.a., biofilm architecture maintenance protein MbaA from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  245 bits (625), Expect = 7e-69
 Identities = 166/562 (29%), Positives = 274/562 (48%), Gaps = 29/562 (5%)

Query: 220 SPPSYRTGLLQSVELQP--GFYAILDPAPKLINAQLHSIQRELLLSFGVSALVTVLMLLL 277
           S P YR    +  + Q   G   I     +L N     ++     +   + L+T L+L +
Sbjct: 125 SRPLYRPFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFATLARALLLT-LVLTV 183

Query: 278 LLYRHVINPILHLDKQLEEVENNQRKN----IEKLNTDDEIGRLSSRFYAMYSELHSTYQ 333
           + +R +  PI  + + ++++E +        +   + DDE+G ++S+F  +  +   T  
Sbjct: 184 VFHRFLTQPIARISEAIDKIEPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFSQTQS 243

Query: 334 RTKALAENDHLTKLANRYQFQVQADLLLSRC-YDTQHIWVMYIDLDNFKYVNDKYGHQIG 392
           + + +A  D LT L NR        + + R     +   +M+IDLD FK +ND  GH +G
Sbjct: 244 KLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRFKNINDSLGHALG 303

Query: 393 DSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAIL---LVSPKRFNDCAKIFAQRL 449
           D  L   A  + ++  +  +        +RL GDEF IL   + SP +  D       +L
Sbjct: 304 DQFLARIARILERVVGDKGS-------VSRLGGDEFVILADSVHSPDQAADFVDKLLVQL 356

Query: 450 LAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQVAYYSQ 509
             PIQ  +++        ASIGI+ +P+DG   E L+ +AD AMY AK AG NQ A++ Q
Sbjct: 357 NVPIQLNEHA----IHPAASIGISIYPEDGSSAEDLIRHADIAMYSAKAAGSNQWAFFKQ 412

Query: 510 ALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELLGE-VSP 568
            + +    R   E +L   L + EF L +QP       ++ G E L+RWQ +  G  +SP
Sbjct: 413 QMTERAAVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQKD--GRLISP 470

Query: 569 EEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIVKEPIQVSINLSSAELNSLKLAQFIH 628
             FIP+AE+TG+   I RWVI ++ + +   Q      I ++IN++S +     L   I 
Sbjct: 471 MSFIPVAEETGIIIPIGRWVIEQSCRVLREWQKKYNYAIPIAINVASQQFADASLVSDIK 530

Query: 629 RQAEQFGVSPAWIDFEITETFAADSQSFPL--LHELSRLGYGLTIDDFGSGYTSITQLVQ 686
           + A ++ + P  ++ EITET   +     +  L +L   G+G+ +DDFG+GY+S++ L  
Sbjct: 531 QMALRYQIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRH 590

Query: 687 YPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLADYECDY 746
            P+  +K DR F+  L       +   ++ L    ++ + AEGIE+E    WL   EC  
Sbjct: 591 LPITTMKIDRCFVSDL--PGDSAIASTILMLGKQLNLTIVAEGIENELQLDWLKSNECQI 648

Query: 747 MQGFYFGYPMSLSEISPWLHAS 768
            QGFYF  P+  ++      AS
Sbjct: 649 GQGFYFSQPLPQADFEALYMAS 670