Pairwise Alignments

Query, 648 a.a., murein transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., soluble lytic murein transglycosylase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  345 bits (885), Expect = 4e-99
 Identities = 203/641 (31%), Positives = 339/641 (52%), Gaps = 8/641 (1%)

Query: 12  LVSILMFTTVWAVGSASAST-LDLEAQRAQYDKAQRWLDEKNVAQYQRIRKQIDSYPLTP 70
           L  +++ + +   G+ +AS    L + +  + +A++ L +++ A Y+ +R ++  YPL  
Sbjct: 5   LTKMVLSSAIIIAGAFNASAAFALTSTQKTFIEAEKALKKQDYATYKPLRAKLGEYPLAI 64

Query: 71  YLDYRAFLIDLGSKPPIAVRNFIDSHKEYPFSARIAAPYLDALARSKKWSALLQFQTQLP 130
           YLD+   +  L        +  ID ++  P   R+   YL      K+W+  L      P
Sbjct: 65  YLDHDMDIGKLNDLRGNDAKLLIDKYQTTPMYQRLRLKYLLNAGGQKRWNDFLSLAQDAP 124

Query: 131 NGETYQCHYYNAKLQTGKRNEAFEGAKKLWLNGASIADACDPLFAEWDRVGGLSDDWVLK 190
                QC++Y AKL  G+   A+  A+ LW+ G S    CD LF  W + G  + + +  
Sbjct: 125 TDVRLQCYFYEAKLAKGEIQTAYTAAQSLWIYGDSRPKECDSLFNTWTKAGKRTQEVIWA 184

Query: 191 RALLAFEGRNRNLIVYLQKKLDGKKSQAKAQGMLELFDKPERVLAYSRKASQDPINQKLA 250
           R LL+F+    +L+ +L +K+    ++AK   ++ +F  P  +    +   ++PI   + 
Sbjct: 185 RMLLSFDEGQTSLLSFLSQKITVHSAEAKR--LVAVFKDPNSLRHTEKFKDKNPIVGDIV 242

Query: 251 ELALQKWARSEPQEAQAVFNDVAKAQGWNQEQKGRVARFIAIRLMDTEEAAIAKWRDEVT 310
              L++ AR +  +A  +++   KA+ ++  Q  ++ +++  R++  ++     W D + 
Sbjct: 243 AAGLKRLARKDLDQAIDLYSHYQKAKRFSPAQDQQLQKYLVRRVLIEQDDNFKDWADNLL 302

Query: 311 RTSQDVRLIEARIRLALRENDWRGLSQWIAVLPEQERKTLRWQYWQGRSEIALGKKKEGT 370
              +   + E R+R A+RE D   +++++ +L  + +   RWQYW  R+  A    +  T
Sbjct: 303 PEMKSDDMFERRLRWAIREQDSTHIARYLDLLSPETQSKERWQYWLYRTN-AQHAPESAT 361

Query: 371 ERLKALLGQRSFYSVAAAKILQQSVNY---PTSTVTLDMKQIKAHKKALARIDELIALDK 427
           + L A+  +R FY  AA+++L + V+    P   V ++  +I+       R+ EL+ALD+
Sbjct: 362 KALAAVSNERGFYGFAASQLLNKPVSLNKSPEPVVDVNSPKIE-DDLGFVRVQELMALDR 420

Query: 428 VPAAKSEWRWLLDRVSQKEKEMLAAYAADSGWYQMTIAATISASLWDNNQLRFPVVHQNL 487
              A+ EW  LL R +   +     YA D GWY   + A+I   LWD+  LRFPV HQ+ 
Sbjct: 421 YFDARYEWVALLKRSNNDMRARYGRYAHDQGWYDFGVEASIQGKLWDDIPLRFPVAHQSG 480

Query: 488 FTLHGRKNGVDPITLMSLARQESALNPDAQSPVGARGLMQIMPDTARYTARKYQLSYSNP 547
           F    +K+ V+   + +++R+ESA    A S VGARGLMQIMP TA+ TA+K+   Y++P
Sbjct: 481 FEHASKKHKVNIDEIRAISRRESAFYLYATSGVGARGLMQIMPATAKATAKKHGAKYNDP 540

Query: 548 DELYQVGKNIEIGSRYLSSLLERYDQNRILAFAAYNAGPSRVDSWLKRSQGKLDAYGFIE 607
            +LY    N+ +GS Y + LL+ ++QNR+LA AAYNAGPSRV  WL  S G+LDA  FIE
Sbjct: 541 KDLYSAELNLNLGSAYYAQLLKEFNQNRVLATAAYNAGPSRVRRWLSESNGQLDAMSFIE 600

Query: 608 AIPFAETRGYVQNILMFETYYRDLMGVQGRFLNEHELNTKY 648
           +IPF ETR YVQ +L +   Y           NE EL   Y
Sbjct: 601 SIPFTETREYVQAVLSYRLIYEAQKQKPLPLFNEAELKFHY 641