Pairwise Alignments

Query, 558 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., signal transduction histidine kinase, LytS (RefSeq) from Shewanella amazonensis SB2B

 Score =  646 bits (1666), Expect = 0.0
 Identities = 323/553 (58%), Positives = 423/553 (76%), Gaps = 1/553 (0%)

Query: 1   MDLILSLLQQMCVYLVLAYMLSKTPIFIPLLNISGRFDHKISVYVLFSLFCIMGTYFGLQ 60
           M LIL L QQMC+YLV  Y+ SKTP+F  L   + R  HK+ +YV+FS FCIM TYFG Q
Sbjct: 1   MSLILLLTQQMCLYLVFVYLASKTPLFKVLTENAPRLPHKVIIYVIFSAFCIMATYFGEQ 60

Query: 61  INDAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTLGGFTDLACAISTTAEGLIGGL 120
            + AIANTRA+GAV+GGL GGPV GF VGLTGGLHRY++GGFTD+ACA+STT EGL  GL
Sbjct: 61  THGAIANTRAMGAVLGGLLGGPVTGFFVGLTGGLHRYSMGGFTDVACALSTTLEGLSAGL 120

Query: 121 LHTYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPFEQSYALVSTIAAPMIIAN 180
           +   L R GK +L+F P +   VT +AE++QMLIIL+VAKP+++++ALV  IA PM++ N
Sbjct: 121 ISLTLRRAGKTELIFHPLVAGFVTFYAEVMQMLIILLVAKPYDEAWALVRQIAPPMLLVN 180

Query: 181 SVGAALFMSILLDRKTIFEEYSATFSRRALNIAERSVGILAAGFNPENANKIARIVYEQT 240
           S+G+ALFMS+L D+K +F++ S+TFS +AL IAERSVG+L+ GFN + + ++ARIV E+T
Sbjct: 181 SMGSALFMSMLKDQKAMFDKLSSTFSTKALKIAERSVGLLSQGFNEKTSAQVARIVIEET 240

Query: 241 NVGAVSITDREKILAFVGIGDDHHKPNTPISSQSTLDAINRNAIIYLDGKEHPYQCSLSP 300
           NVGAV+ITDREK+LAF+GIG DHH P TPI+S  TL+AI  N +++ DG E PY CS+S 
Sbjct: 241 NVGAVAITDREKLLAFIGIGADHHIPGTPIASAITLEAIRDNKVMFADGMEVPYACSISS 300

Query: 301 TCKLGSALIIPLRAGDRVIGTIKLYEPKRKLFSTINMSMAQGIAQLLSSQILYGEYQQKQ 360
            C+LGS+L+IPLR+   VIGTIKLYEPK KLF  IN ++ +GIA+LLS+QILYG  +Q++
Sbjct: 301 QCRLGSSLVIPLRSDTEVIGTIKLYEPKNKLFLNINRTLGEGIAKLLSNQILYGRVEQQK 360

Query: 361 ILLSRAEIKLLQAQVNPHFLFNALNTISAVIRREPDKARELILHLSQFFRSNLKQNVETV 420
            LL++ E+KLLQAQVNPHFLFNALNTI A+IRR+PD AR L+  LSQF R NLK++ E V
Sbjct: 361 NLLTQTELKLLQAQVNPHFLFNALNTIGAIIRRDPDMARGLLQKLSQFLRINLKRSPEMV 420

Query: 421 TLREELAHVNAYLTIEKARFSDRLDVEIAIDDALLERNVPSFTLQPLVENAIKHGTSNLL 480
           TL +EL H++AYL IEKARF DRL V IAI   L+ + +P+FTLQP++ENA+KHGTS LL
Sbjct: 421 TLADELEHIDAYLGIEKARFIDRLSVNIAIPPELMHQKLPAFTLQPIIENAVKHGTSQLL 480

Query: 481 EAGKVRIYSEVVEGGMRVVVEDNAGLYQPPSEDYDGLGMQIVEKRLTNKFGLKSGLQIEV 540
             G + +     E  + + V DNAGLY+ P+ + +GLGM +V KR+ N+FG + G+ +E 
Sbjct: 481 SPGVIDVSGRQQEQMLVLEVADNAGLYR-PTPNNEGLGMNLVHKRIQNQFGEQYGVTVEC 539

Query: 541 APQEYTRMSFVIP 553
            P   TR+   +P
Sbjct: 540 EPDTLTRVRICLP 552