Pairwise Alignments

Query, 558 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 576 a.a., Signal Transduction Histidine Kinase (STHK), LytS (NCBI) from Rhodospirillum rubrum S1H

 Score =  656 bits (1693), Expect = 0.0
 Identities = 331/552 (59%), Positives = 430/552 (77%), Gaps = 2/552 (0%)

Query: 3   LILSLLQQMCVYLVLAYMLSKTPIFIPLLNISGRFDHKISVYVLFSLFCIMGTYFGLQIN 62
           L++SL QQMCVYLV+AY+LSKTP+FIPL++++ R  HK + Y +FSLFCIMGTYFGL+I+
Sbjct: 8   LVISLSQQMCVYLVVAYLLSKTPLFIPLVHVTIRLPHKAACYAIFSLFCIMGTYFGLRID 67

Query: 63  DAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTLGGFTDLACAISTTAEGLIGGLLH 122
           D+IANTRAIGAV+GG+ GGP +G AVGLTGGLHRY++GGFT LACAISTTAEGLIGGL+H
Sbjct: 68  DSIANTRAIGAVLGGMLGGPSVGLAVGLTGGLHRYSMGGFTALACAISTTAEGLIGGLVH 127

Query: 123 TYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPFEQSYALVSTIAAPMIIANSV 182
            YL+ +G+   LF P +V  VTLFAE+ QMLII++VA+P   +  LV TIA PM++ANSV
Sbjct: 128 RYLVSRGQTGKLFQPLVVGLVTLFAEVCQMLIIILVARPAVNAVHLVETIALPMLVANSV 187

Query: 183 GAALFMSILLDRKTIFEEYSATFSRRALNIAERSVGILAAGFNPENANKIARIVYEQTNV 242
           GAA+FM+ILLDR+T+FE  S+ FS +AL IA R+ G L +GFN EN+ ++ARI+YE+T V
Sbjct: 188 GAAMFMTILLDRRTMFETQSSVFSAKALKIAARAEGALRSGFNRENSMRVARIIYEETGV 247

Query: 243 GAVSITDREKILAFVGIGDDHHKPNTPISSQSTLDAINRNAIIYLDGKEHPYQCSLSPTC 302
           GAV+ITDR+KILAF+GIGDDHHKP   ++S  TL++I  N ++Y DG E  YQCS+SPTC
Sbjct: 248 GAVAITDRDKILAFIGIGDDHHKPGMAVTSLQTLESIRENRVMYADGNEVAYQCSISPTC 307

Query: 303 KLGSALIIPL-RAGDRVIGTIKLYEPKRKLFSTINMSMAQGIAQLLSSQILYGEYQQKQI 361
            LG+AL+IPL   G++VIGTIKLYEPK +LFSTIN ++ +G+A+LLS+QIL G Y+Q++ 
Sbjct: 308 PLGAALVIPLVDEGEQVIGTIKLYEPKTRLFSTINRTLGEGVARLLSTQILAGRYEQQRQ 367

Query: 362 LLSRAEIKLLQAQVNPHFLFNALNTISAVIRREPDKARELILHLSQFFRSNLKQNVETVT 421
           LL+++EIKLL AQVNPHFLFNALNT+SAVIR +PD AR L+  LS FFR NLK+  E VT
Sbjct: 368 LLAQSEIKLLHAQVNPHFLFNALNTLSAVIRLDPDHARHLVQSLSTFFRKNLKRTSEQVT 427

Query: 422 LREELAHVNAYLTIEKARFSDRLDVEIAIDDALLERNVPSFTLQPLVENAIKHGTSNLLE 481
           L +E+  V+AYL IE ARF DRL V+  +   L    +P+F+LQPLVENAIKHGT+ LL 
Sbjct: 428 LNDEVEQVSAYLEIELARFGDRLSVDFNVPADLGTATLPTFSLQPLVENAIKHGTAQLLG 487

Query: 482 AGKVRIYSEVVEGGMRVVVEDNAGLYQPPSEDYDGLGMQIVEKRLTNKFGLKSGLQIEVA 541
            G++ + +E   G + V VEDNAGLY+      DGLGM +V++R+  ++G   GL +E  
Sbjct: 488 DGRIGVSAERQGGDLVVRVEDNAGLYE-RRPGGDGLGMNLVDRRIRARYGQGYGLSVECE 546

Query: 542 PQEYTRMSFVIP 553
               TR+   +P
Sbjct: 547 RDVVTRVILRVP 558