Pairwise Alignments

Query, 558 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., signal transduction histidine kinase, LytS (RefSeq) from Shewanella loihica PV-4

 Score =  640 bits (1652), Expect = 0.0
 Identities = 318/554 (57%), Positives = 422/554 (76%), Gaps = 1/554 (0%)

Query: 1   MDLILSLLQQMCVYLVLAYMLSKTPIFIPLLNISGRFDHKISVYVLFSLFCIMGTYFGLQ 60
           M LIL L QQMC+YLV+ Y+LSKTP+F      + R  HKI +Y++FS FCIM TYFG Q
Sbjct: 1   MPLILLLTQQMCLYLVIVYLLSKTPLFKLFAETATRLPHKIYIYLIFSGFCIMATYFGEQ 60

Query: 61  INDAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTLGGFTDLACAISTTAEGLIGGL 120
            NDAIANTRA+GAV+GGL GGPV GF VGLTGGLHRY++GGFTDLACAISTT EGL  G+
Sbjct: 61  TNDAIANTRAMGAVLGGLLGGPVTGFLVGLTGGLHRYSMGGFTDLACAISTTLEGLSAGI 120

Query: 121 LHTYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPFEQSYALVSTIAAPMIIAN 180
           +  YL ++ + +++++P +V  VT  AE++QM +IL +AKP+  + ALV  IA PM+  N
Sbjct: 121 VGFYLRKQNRSEMVYAPLLVALVTFSAEMLQMALILAIAKPYGDALALVKQIALPMLTVN 180

Query: 181 SVGAALFMSILLDRKTIFEEYSATFSRRALNIAERSVGILAAGFNPENANKIARIVYEQT 240
           S+GAALFMS++ D+KT+F++ S+ FS +AL IAERSVGIL+ GF+ E + K+A+I+ E+T
Sbjct: 181 SIGAALFMSMVRDQKTMFDKLSSAFSTKALKIAERSVGILSKGFDQEGSTKVAQIILEET 240

Query: 241 NVGAVSITDREKILAFVGIGDDHHKPNTPISSQSTLDAINRNAIIYLDGKEHPYQCSLSP 300
           NVGAV+ITDREK+LAF+GIGDDHH P TPISS+ T DAI +N +++ DG E PY CS+SP
Sbjct: 241 NVGAVAITDREKLLAFIGIGDDHHIPGTPISSKITQDAIEQNCVMFADGVETPYACSISP 300

Query: 301 TCKLGSALIIPLRAGDRVIGTIKLYEPKRKLFSTINMSMAQGIAQLLSSQILYGEYQQKQ 360
            C+LGS+L+IPLR    VIGTIKLYEPK KLF  IN ++ +GIA+L+S+QILYG Y+ +Q
Sbjct: 301 QCRLGSSLVIPLRCESEVIGTIKLYEPKNKLFLNINRTLGEGIARLMSNQILYGRYELQQ 360

Query: 361 ILLSRAEIKLLQAQVNPHFLFNALNTISAVIRREPDKARELILHLSQFFRSNLKQNVETV 420
            LL++AE+KLLQAQVNPHFLFNALNTI+A+I ++P  AR+L+ HLSQF R NLK+    V
Sbjct: 361 SLLTQAELKLLQAQVNPHFLFNALNTIAAIIGKDPLMARQLLQHLSQFLRINLKRTTGLV 420

Query: 421 TLREELAHVNAYLTIEKARFSDRLDVEIAIDDALLERNVPSFTLQPLVENAIKHGTSNLL 480
           TL +EL H++AYLTIEKARF D+L V I I   L +  +P+FTLQP++ENA+KHGTS+LL
Sbjct: 421 TLSDELEHIDAYLTIEKARFIDKLSVHIDIPATLHQYRLPAFTLQPIIENAVKHGTSHLL 480

Query: 481 EAGKVRIYSEVVEGGMRVVVEDNAGLYQPP-SEDYDGLGMQIVEKRLTNKFGLKSGLQIE 539
           E G++ +     +  + + V+DNAGLY+   + D  GLGM IV KR+ + FG   G++I 
Sbjct: 481 EPGEIWVSGRAEQDLLILEVKDNAGLYREELNADTSGLGMSIVHKRIQSLFGPHYGVKIN 540

Query: 540 VAPQEYTRMSFVIP 553
                +T++   +P
Sbjct: 541 CEKDRFTQVIITLP 554