Pairwise Alignments

Query, 558 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  666 bits (1719), Expect = 0.0
 Identities = 329/557 (59%), Positives = 438/557 (78%), Gaps = 1/557 (0%)

Query: 1   MDLILSLLQQMCVYLVLAYMLSKTPIFIPLLNISGRFDHKISVYVLFSLFCIMGTYFGLQ 60
           M LIL L QQM +YLV+ Y++SKTP+F      S R  HKI +Y++FS FCIM TYFG Q
Sbjct: 1   MSLILLLTQQMSLYLVIVYLVSKTPLFKLFAETSPRLPHKIFIYLVFSSFCIMATYFGEQ 60

Query: 61  INDAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTLGGFTDLACAISTTAEGLIGGL 120
            + AIANTRA+GAV+GGL GGPV GF VGLTGGLHRY++GGFTDLACAISTT EGL  G+
Sbjct: 61  TSGAIANTRAMGAVLGGLLGGPVTGFLVGLTGGLHRYSMGGFTDLACAISTTLEGLSAGM 120

Query: 121 LHTYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPFEQSYALVSTIAAPMIIAN 180
           +  YL R GK +L+++P +V  VT +AEI+QM +IL++A PF+ ++ LV  IA PM++ N
Sbjct: 121 ISFYLRRAGKSELIYNPLLVCLVTFYAEIMQMSLILLIACPFDAAWELVRQIAPPMLLVN 180

Query: 181 SVGAALFMSILLDRKTIFEEYSATFSRRALNIAERSVGILAAGFNPENANKIARIVYEQT 240
           S+GAALFMS++ D+KT+F++ S++FS +AL IAERSVG+L+ GFN E++ K+A+IV E+T
Sbjct: 181 SIGAALFMSMIRDQKTMFDKLSSSFSTKALKIAERSVGLLSKGFNEESSGKVAQIVIEET 240

Query: 241 NVGAVSITDREKILAFVGIGDDHHKPNTPISSQSTLDAINRNAIIYLDGKEHPYQCSLSP 300
           NVGAV+ITDREK+LAF+GIG DHH P TPISSQ TL+AIN+N +++ DG E PY CS+S 
Sbjct: 241 NVGAVAITDREKLLAFIGIGADHHIPGTPISSQITLEAINQNKVMFADGVEIPYSCSISS 300

Query: 301 TCKLGSALIIPLRAGDRVIGTIKLYEPKRKLFSTINMSMAQGIAQLLSSQILYGEYQQKQ 360
            CKLGS+L+IPLR+   VIGTIKLYEPK KLF  IN ++ +GIA+LLS+QILYG ++Q+Q
Sbjct: 301 QCKLGSSLVIPLRSDTEVIGTIKLYEPKNKLFLNINRTLGEGIARLLSNQILYGRFEQQQ 360

Query: 361 ILLSRAEIKLLQAQVNPHFLFNALNTISAVIRREPDKARELILHLSQFFRSNLKQNVETV 420
            LL++AE+KLLQAQVNPHFLFNALNTISA+I+R+PD +++L+  LSQF R NLK+    V
Sbjct: 361 NLLTQAELKLLQAQVNPHFLFNALNTISAIIKRDPDMSKQLLQQLSQFLRINLKRTTGLV 420

Query: 421 TLREELAHVNAYLTIEKARFSDRLDVEIAIDDALLERNVPSFTLQPLVENAIKHGTSNLL 480
           TL +EL H+ +YLTIEKARF ++L V IAI ++L    VP+FTLQP++ENA+KHGTS+++
Sbjct: 421 TLGDELDHIASYLTIEKARFINKLQVNIAIPESLYHCKVPAFTLQPIIENAVKHGTSHMI 480

Query: 481 EAGKVRIYSEVVEGGMRVVVEDNAGLYQPPSEDYDGLGMQIVEKRLTNKFGLKSGLQIEV 540
           + G++++   + E  + + V DNAGLYQ PS D +GLGM +V KR+ N FG + GLQ+E 
Sbjct: 481 DQGQIKVTGRLDEHVLALEVIDNAGLYQ-PSTDSEGLGMNLVHKRIQNLFGEQYGLQVEC 539

Query: 541 APQEYTRMSFVIPQQGT 557
            P EYT++   +P + T
Sbjct: 540 EPDEYTKVIIRLPIEKT 556