Pairwise Alignments

Query, 558 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., signal transduction histidine kinase LytS from Klebsiella michiganensis M5al

 Score =  240 bits (612), Expect = 1e-67
 Identities = 171/569 (30%), Positives = 300/569 (52%), Gaps = 38/569 (6%)

Query: 3   LILSLLQQMCVYLVLAYMLSKTPIFIPLLNISGRFDHKI-SVYVLFSLFCIMGTYFGLQI 61
           ++L++  +  + L+  + L +  +F  LL+ S     ++ +V  +FSLF +  T+ G+ +
Sbjct: 7   MLLAVFDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPV 66

Query: 62  NDAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTLG--GFTDLACAISTTAEGLIGG 119
             ++ N R I  + GG+  GP +G  VG   G+HRY +   G T + C I++   GL+ G
Sbjct: 67  EGSLVNVRIIAVMSGGILFGPWVGAIVGAIAGIHRYLIDIDGVTAVPCFITSIVAGLLSG 126

Query: 120 LLHTYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPFEQSYALVSTIAAPMIIA 179
               ++ RK      +   I+    +  E + M++++V A        +VS I  PMI+ 
Sbjct: 127 ----FISRKVPKAQRWKAGILAG--MLCETLTMILVVVWAPSLALGIDIVSKIGIPMIL- 179

Query: 180 NSVGAALFMSILLDRKTIFEEYSATFSRRA---LNIAERSVGILAAGFNPENANKIARIV 236
              G+     I+L  +++  E  A+ +R+A   L+IA +++ +     N E+  ++  I+
Sbjct: 180 ---GSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRH-VNSESLRQVCDII 235

Query: 237 YEQTNVGAVSITDREKILAFVGIGDDHHKPNTPISSQSTLDAINRNAIIYLDGKEHPYQC 296
               N  AV+IT+ ++++A+VG+G+ +++ N  + S +T  AI    II  +  E     
Sbjct: 236 RRDINADAVAITNTQQVMAYVGVGEINYRDNDDVISPTTQQAIRYGKIIIKNNDE----- 290

Query: 297 SLSPTCKLGSALIIPLRAGDRVIGTIKLYEPKRKLFSTINMSMAQGIAQLLSSQILYGEY 356
               T ++ S L+IPL     V GT+K+Y       ++    MA G++Q++S+Q+     
Sbjct: 291 -AHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHRITSSLQEMAIGLSQIISTQLEVSRA 349

Query: 357 QQKQILLSRAEIKLLQAQVNPHFLFNALNTISAVIRREPDKARELILHLSQFFRSNLK-Q 415
           +Q + + ++AE++ LQ+++NPHFLFNALN IS+ IR  PD AR+LI +LS++ R N++ +
Sbjct: 350 EQLREMANKAELRALQSKINPHFLFNALNAISSSIRMNPDTARQLIFNLSRYLRYNIELK 409

Query: 416 NVETVTLREELAHVNAYLTIEKARFSDRLDVEIAIDDALLERNVPSFTLQPLVENAIKHG 475
           + E + ++ EL  +  Y+ IE+ARF D+L V   IDD  +   +PS  +QPLVENAI HG
Sbjct: 410 DDEQIDIKRELYQIKDYIAIEQARFGDKLTVIYDIDDE-VSFMIPSLLIQPLVENAIVHG 468

Query: 476 TSNLLEAGKVRIYSEVVEGGMRVVVEDNAGLYQP------PSEDYDG--LGMQIVEKRLT 527
                  G V I        +R+ V D      P       +++  G  +G+  V  R+ 
Sbjct: 469 IQPCKGKGVVTIGINECGNRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVK 528

Query: 528 NKFGLKSGLQI-EVAPQEYTRMSFVIPQQ 555
             +G   GL I  + P   T ++F +P Q
Sbjct: 529 LLYG--EGLHIRRLTPG--TEIAFYVPTQ 553