Pairwise Alignments

Query, 558 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., regulatory protein LytS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  332 bits (852), Expect = 2e-95
 Identities = 199/522 (38%), Positives = 300/522 (57%), Gaps = 20/522 (3%)

Query: 45  VLFSLFCIMGTYFGLQINDAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTL--GGF 102
           VLFSLF I+GTY G  +  + AN RA+GAV  GLFGGP++G   GL  G HRY +  GGF
Sbjct: 44  VLFSLFTILGTYNGNIVFQSFANLRAMGAVTAGLFGGPMVGALTGLIAGGHRYFIDVGGF 103

Query: 103 TDLACAISTTAEGLIGGLLHTYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPF 162
           + + C ++T  EGL  GL   +  R     L +  ++ FA     E V M ++L +A+P+
Sbjct: 104 SAVPCGLATFLEGLAAGL---FAWRFPSRSLDWGTAMTFAAV--GEAVHMCLVLGLARPY 158

Query: 163 EQSYALVSTIAAPMIIANSVGAALFMSILLDRKTIFEEYSATFSRRALNIAERSVGILAA 222
            Q+  LV  I  PMI+ N VGAA+F+  L  +    +   ++ +R+ L+IA R++  L A
Sbjct: 159 AQAVDLVEVIGLPMILLNGVGAAIFVQALRMQMHFRDLRDSSQARQILSIANRTLPHLRA 218

Query: 223 GFNPENANKIARIVYEQTNVGAVSITDREKILAFVGIGDDHHKPNTPISSQSTLDAINRN 282
           G +  +A   A I+ ++T V AV++T  + ++A VG   DHH+    + +Q+T       
Sbjct: 219 GLSAASARATAEIILDETRVAAVALTSNDMVMAHVGAASDHHRAGHSVCTQATRRVATDG 278

Query: 283 AIIYLDGKEHPYQCSLSPTCKLGSALIIPLRAGDRVIGTIKLYEPKRKLFSTINMSMAQG 342
             +++ G +    C L   C L SA+I+PLR GD ++G +KLY  K +        +A+G
Sbjct: 279 IPLFVTGHDE-IGCQLE-ACPLCSAIIVPLRKGDTILGCLKLYGTKDRPLDQTLFELAKG 336

Query: 343 IAQLLSSQILYGEYQQKQILLSRAEIKLLQAQVNPHFLFNALNTISAVIRREPDKARELI 402
           +A L ++QI   +   K  LL+RAEI+ LQAQ+NPHFLFN+LNT+++  R  P +ARELI
Sbjct: 337 LADLFATQIELEDIGIKNQLLARAEIRRLQAQINPHFLFNSLNTVASFCRTAPGQARELI 396

Query: 403 LHLSQFFRSNLKQNVETVTLREELAHVNAYLTIEKARFSDRLDVEIAIDDALLERNVPSF 462
           L L+++ R NL  + E + L EE+  + AYL IEKARF +R+   I ID       VP  
Sbjct: 397 LDLARYMRRNLDTSREAIHLAEEVEQIRAYLVIEKARFGERIRAVIDIDPETEHCLVPPL 456

Query: 463 TLQPLVENAIKHGTSNLLEAGKVRIYSEVVEGGMRVVVEDN-AGLYQ----------PPS 511
            +QPLVEN+++HG     E G VR+ + + +G + VVVED+ AG+ +          P +
Sbjct: 457 LIQPLVENSVRHGILGNEEGGVVRLATSMEDGHVVVVVEDDGAGMPESTRQGILNGTPVT 516

Query: 512 EDYDGLGMQIVEKRLTNKFGLKSGLQIEVAPQEYTRMSFVIP 553
              +G+G     +RL   +G    L I+ AP   TR++F +P
Sbjct: 517 AHGEGIGASNCNQRLVQLYGPAYALSIDSAPGMGTRITFRVP 558