Pairwise Alignments

Query, 237 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 77.8 bits (190), Expect = 2e-19
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 33/262 (12%)

Query: 2   LSALLIDDERFAREELAELLAE---SGQIEVI-GQASNAIEGLKKINQLKPDVVFLDIQM 57
           ++A++I+DE  A   L   L E     QI V+ G    ++E   +     PD+VFLDIQ+
Sbjct: 4   ITAVIIEDEIPAARRLNNTLNELRPEWQITVLPGSVKKSVEWFAE--NPHPDLVFLDIQL 61

Query: 58  PQISGIELLSMLDPETMPEVVFVTAYDQYALQAFEDNAFDYLLKPVDTERLAKTV---QR 114
                   +    PE+   ++F TAYD+YA++AF  N+ DYLLKP+D  RL + +   + 
Sbjct: 62  TDGISFTFIEQAQPEST--IIFTTAYDEYAIRAFTVNSIDYLLKPIDNIRLEEAIVKFEH 119

Query: 115 LLRQHKKSDYSP---------LTQPS---LDQIPCTGLNRIVLLPINEVEFAYSDISGVN 162
           L  ++      P         +TQP      +   +G +++  L + ++ + YS+     
Sbjct: 120 LTTKYLNQGQKPIDLMEILQNITQPGKKYRTRFLISGDDKLFTLQVEDIAYFYSENKITF 179

Query: 163 VQTAQQKA-TSQLTLKVLEEK---TALVRCHRQYLVNLKAIREIKLLENGLAEMITHA-- 216
             T Q +     L+L  L E+       R +RQ +V++ AI  +K+    L + I H   
Sbjct: 180 AVTKQNREFIIDLSLDKLMEQLDPDVFFRSNRQTVVSINAI--VKVESYFLGKAILHVKP 237

Query: 217 --GHKVPVSRRYLKELKEMLGF 236
               K+ VSR  +  LK  L +
Sbjct: 238 PFKDKIIVSRDKIAPLKLWLNY 259