Pairwise Alignments

Query, 330 a.a., beta-hexosaminidase from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., beta-hexosaminidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  272 bits (695), Expect = 1e-77
 Identities = 159/339 (46%), Positives = 209/339 (61%), Gaps = 18/339 (5%)

Query: 1   MGPLWLDVAGYELSAEDREILQHPTVGGVILFGRNYHDNQQLLALNKAIRQAAKRP-ILI 59
           M  L LD+   ++S  + E+L+HP VGG+ILF RN+   +QL+AL + IRQ   RP ILI
Sbjct: 1   MSYLMLDLLSLDVSEAEAEMLRHPQVGGLILFSRNFTSREQLIALVQQIRQI--RPEILI 58

Query: 60  GVDQEGGRVQRFREGFSRIPP-AQYYARAENGVELAEQG----GWLMAAELIAHDVDLSF 114
            VD EGGRVQRFREGF+ IP        A+  + LA++     G+LMA EL+A D+DLSF
Sbjct: 59  AVDHEGGRVQRFREGFTLIPAMGDILPAAKGDMALAKRWACELGFLMAIELLACDIDLSF 118

Query: 115 APVLDMGFACKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGMATTGKHFPGHGAVIADSHL 174
           APVLD+    + IG R+F  +   V+  + +F+ GM   GM   GKHFPGHG+V ADSH+
Sbjct: 119 APVLDLNGISQVIGKRSFSANPDEVIALARSFIEGMAQAGMGAVGKHFPGHGSVAADSHI 178

Query: 175 ETPYDERE---TIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLRE 231
             P DERE      QD+  F+  I  G L  +MPAHV+YP  D  PA  SSYWLKQ+LR+
Sbjct: 179 AQPIDEREGEVIFNQDILPFKELIFNGKLSGIMPAHVIYPKVDPNPAGFSSYWLKQILRK 238

Query: 232 ELGFKGIVFSDDLSMEGAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIME- 290
           ELGF G++FSDDL M+GA+  G  V R+  AL AGCDMIL+CN     + +L+     E 
Sbjct: 239 ELGFNGVIFSDDLGMKGASFAGDYVGRAKAALDAGCDMILVCNDNPGVMTLLNGFVWPEA 298

Query: 291 VPQAEALLKKQQFSYS--ELKRLERWQQASANMQRLIEQ 327
            PQ  A L K   + +   L+   RW+    N ++L EQ
Sbjct: 299 APQHPASLLKPNMAQTALALENSARWE----NAKQLAEQ 333