Pairwise Alignments

Query, 599 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., sodium/hydrogen exchanger (RefSeq) from Shewanella loihica PV-4

 Score =  526 bits (1355), Expect = e-153
 Identities = 275/588 (46%), Positives = 392/588 (66%), Gaps = 7/588 (1%)

Query: 5   ESIALTIAAVGVVGLGCQWLAWRLRLPAILFLLLAGILAGPVFGVLNPEALMGDLLFPLV 64
           E I   +  VG++ + CQWL WRLRLPAIL LLL G+L GPVF +L+P+A+ GDLLFP++
Sbjct: 3   EKITAMLGLVGILSIVCQWLGWRLRLPAILPLLLCGLLVGPVFNLLDPDAIFGDLLFPVI 62

Query: 65  SLAVAVILFEGSLTLNFKEIRGVSNTVWSIVTVGALVSWGITSTAAHWLLGFEWPLALMF 124
           SL VAVILFEG+LTLNF EIR     V  +V++G LV+W     A H+++GF W LA++F
Sbjct: 63  SLGVAVILFEGALTLNFSEIREHGRMVTHLVSLGTLVTWICIGVATHFIMGFSWELAMLF 122

Query: 125 GSLTVVTGPTVIVPLLRTVRPTARLANILRWEGILIDPLGALFVVMVYEFIVSSSHAHSL 184
           G+L VVTGPTVIVP+LR+++P ++LA+ILRWEGI+IDP+GAL  V+V+E++  ++   S 
Sbjct: 123 GALVVVTGPTVIVPMLRSIKPKSQLASILRWEGIVIDPIGALLAVLVFEYLTVAAEPASH 182

Query: 185 EVFSL--ILLVGFSIGIASGVAVAAVLRRGLLPEYLQPFAVLSVVLGVFAASNALESESG 242
            + SL  +L VG  +G+  G  +  +LRR  +P YL+  AVL+++LG F ASN L+ ESG
Sbjct: 183 VLLSLFSMLGVGLGLGVLFGYGIGVMLRRAWVPHYLKNTAVLTIMLGAFVASNLLQEESG 242

Query: 243 LLTVTVMGMWLANAKGVNIQHILHFKEHLTILLITGLFILLAARIEVADFQALGWSALGL 302
           LLTVTVMG+WLAN +GV+I  I+ FKE LT+L I+GLFILLAAR++      LGW  L L
Sbjct: 243 LLTVTVMGIWLANMRGVDIGEIIEFKETLTVLFISGLFILLAARLDSTALMQLGWQGLAL 302

Query: 303 FVVMQLLARPASIFISTLRSTLNVREKAFLAWVAPRGIVAASISSLFAIKLMEFGIADAK 362
            +V+  +ARP S++   + ++L   +K FL+WVAPRGIVAA++SSLFAIKL    +A A 
Sbjct: 303 LLVVMFIARPLSVWCCAVGTSLPRADKWFLSWVAPRGIVAAAVSSLFAIKLERLEVAGAD 362

Query: 363 LLVPLTFMVIIGTVVLQSATARPMALALKVSEPAPKGFLIIGANDVARQVGLAIAKYDCR 422
            +VPL F++IIGTVV QS TA   A  L V   + +G LI GA+  AR++   + + +  
Sbjct: 363 KIVPLVFLIIIGTVVSQSLTAGAWARFLGVKAGSAQGLLIFGASKFARELAKVLLQKNVS 422

Query: 423 VVVTDSNWDYIRQARMTGLEHYYGNPISSHAEDYLNLIGIGHVLALSPDKHFNIMACMQF 482
           VV+ D+NWD IR +RM  +  Y+GNP S HA++ L++ G+G +L LSP +  N +    F
Sbjct: 423 VVLADNNWDNIRLSRMDNIPVYFGNPASEHADNALDMTGLGRLLVLSPYRQLNPLVTFHF 482

Query: 483 LSDFGDKRVFCLNDNPTNNVSEKHLVAQEY-HGLPFLGGEVSYKKLASLVGQGAEVKHTK 541
               G  +VF L     N  S +H +++ Y   L   G  V+Y +LAS + +G ++K T 
Sbjct: 483 QDILGKNKVFGLGSGEGN--SARHQLSESYLERLCLFGDNVTYARLASTIAKGGKIKSTS 540

Query: 542 LSENFTYQDYQQIHKESFVLPLFSVDSRGRVQMCQDVASFAPKEGEIV 589
           L+ENF++ D++Q + E   LPL  +   G+V++        P   E++
Sbjct: 541 LTENFSFADFKQRYGEG-ALPLIYL-QEGKVKLIIQAVDDLPVGIELI 586