Pairwise Alignments

Query, 525 a.a., lipid II flippase MurJ from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., murein biosynthesis integral membrane protein MurJ from Rhodanobacter denitrificans MT42

 Score =  410 bits (1054), Expect = e-119
 Identities = 232/549 (42%), Positives = 332/549 (60%), Gaps = 47/549 (8%)

Query: 7   SKRLLKSGIIVSAMTLISRVLGLVRDVVVANLMGAGASADVFFFANRIPNFLRRLFAEGA 66
           S  +L+  +  S+MT++SRVLGLVRD+ +    GA  + D F+ A RIPNF+RRLFAEG+
Sbjct: 3   SPSMLRGLLSFSSMTMVSRVLGLVRDMSINAAFGANGATDAFWVAFRIPNFMRRLFAEGS 62

Query: 67  FSQAFVPVLTEYHASGDINKTRDLIARASGTLGVLVTIVTLIGVLGSGAVTALFGAGWFL 126
           FS AFVPV TE    G   + ++L+AR SGTLG ++ ++T +G+L +  VT LF  G   
Sbjct: 63  FSTAFVPVFTEVKEKGSHAQLKELMARVSGTLGGVLLLITALGILFAPQVTVLFSPGAID 122

Query: 127 DWLNGGPAAGKFELASLLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNVMMI 186
           +         KFEL   LL++TFP+L F++  ALSG  LN+  +F + + TPV LN+ MI
Sbjct: 123 E-------PRKFELTVELLRLTFPFLLFVSLTALSGGALNSFHRFGLPALTPVILNLCMI 175

Query: 187 LCAWYLSPNLEQPEVGLAIGVFLGGLVQFLFQLPFLIKAGVLVRPKWGWKDPGVVKIRTL 246
             A +LS  L+ P + +   +   G++Q LFQLP L +  +L  P+WGW  P V KI  L
Sbjct: 176 AGALWLSKRLQTPIMAMGWAILAAGILQLLFQLPALRQLDLLTLPRWGWSHPEVRKIMRL 235

Query: 247 MIPALFGVSVSQINLLFDSFVASFLQTGSISWLYYSDRLLEFPLGLFGIAIATVILPALS 306
           M+P LFG SV+QINLLFD+ +AS L  GS SWL  +DR LE PLG+FG+A+ TVILP+LS
Sbjct: 236 MVPTLFGSSVAQINLLFDTVIASLLVVGSQSWLSQADRFLELPLGVFGVALGTVILPSLS 295

Query: 307 RKHVDAHSDGFAHTMDWGIRMVTFLGIPAMLGLMVLAKPMLMVLFMRGEFTPSDVEQASY 366
           R HV   + GF+  +DWG+R+   + +PAM  LM+LA P++  LF  G ++  D   A+ 
Sbjct: 296 RHHVSTDTAGFSRALDWGLRVTLLIAVPAMFALMLLAGPLVATLFQHGHWSAHDTAMATL 355

Query: 367 SLLAYSSGLLSFMLIKVLAPGYYSRQDTKTPVRYGIIAMVSNIVLNAIF----------- 415
           S+ A S GL +F L+KVL P +Y+RQDT+TPVR  + ++++N++LN +F           
Sbjct: 356 SITALSFGLPAFALVKVLLPAFYARQDTRTPVRAAVASLLANMLLNVVFLTLLFELWAPV 415

Query: 416 -----AWFYG-------YVGLAVATSMSAFLNMALLYRGLHLQGVYHLTRKTVW--FVAR 461
                 W  G       ++ L +A++++A++N+ LL+  L   GVY   R+  W   + R
Sbjct: 416 ELKRLPWLDGLARLPGLHMALGLASAVAAYVNLGLLWHWLKRAGVYQ--RQPGWSRHLLR 473

Query: 462 LAMAGAVMTGALL---WQLDTMATWLSWGISQRALT----LTGLIGLGVASYLAILLLLG 514
           LA+A AVM   LL   W       W +W      LT    L  L+  G A Y+A+L   G
Sbjct: 474 LAVACAVMVALLLLGRW------LWPNWTHGVPVLTRLWHLAVLVLAGGAGYVAVLFAGG 527

Query: 515 VRLKDLKAA 523
            RL+DL+AA
Sbjct: 528 FRLRDLRAA 536