Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N2E2

 Score =  198 bits (504), Expect = 1e-55
 Identities = 110/296 (37%), Positives = 164/296 (55%), Gaps = 5/296 (1%)

Query: 4   LNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTEL 63
           LNY  L+YFW+V K GS+ +A + L LTPQT++GQI   E   + KL +R GR +E TE 
Sbjct: 2   LNYRQLHYFWVVAKTGSIVRACEQLNLTPQTISGQISLFEQTYNIKLFRRVGRQLELTEA 61

Query: 64  GQLVFKYADRMFGLSYEM-LDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDNRI 122
           G+    YA+ MF L  E+ L +         LF VGVAD + K +V ++L  ++     +
Sbjct: 62  GRQTLPYAEHMFQLGGELELMLRAQPNEQQTLFRVGVADVVPKSIVYRLLAPTMELSEPL 121

Query: 123 HLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFF---SFGDVD 179
            + C E   E LL  LA  +LD+++SD P+ +      +S+KLGE  +SFF   +  +  
Sbjct: 122 RITCREDKLERLLADLAIQRLDLVISDSPMPTHLDIKGYSQKLGECGISFFATAALAERY 181

Query: 180 FAPFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAV 239
              FP  L    LL+PG  T +  ++++WF  Q +QP I+GEFDDSALM+AF       +
Sbjct: 182 GQDFPHGLHDAPLLIPGPETVVRSRLQRWFAEQQIQPRIVGEFDDSALMQAFG-QSGSGI 240

Query: 240 FMAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           F+ PS    EV  +  +++IG  D + E +Y I  ER + HP +  + +     LF
Sbjct: 241 FIGPSVIAEEVKRQYGVEVIGQTDAVSESFYAISVERKVSHPGIVAIAEGARRELF 296