Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., transcriptional regulator, LysR family from Pseudomonas syringae pv. syringae B728a

 Score =  211 bits (537), Expect = 2e-59
 Identities = 115/296 (38%), Positives = 172/296 (58%), Gaps = 5/296 (1%)

Query: 4   LNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPTEL 63
           LNY  L+YFW+V K GS+ +A + L LT QTV+GQI  LE  L   L +R GR +E TE 
Sbjct: 2   LNYRQLHYFWVVAKTGSIVRACEQLNLTAQTVSGQISLLEASLGVDLFQRVGRQLEMTEA 61

Query: 64  GQLVFKYADRMFGLSYEMLDIV-NYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDNRI 122
           G+L   YA++MF L  ++ +++ +      LL  +GVAD + K +V +++  ++  D  I
Sbjct: 62  GRLALPYAEQMFQLGNDLENLLRSQPDEQQLLLRIGVADVVPKSIVYRLIAPTMTLDESI 121

Query: 123 HLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVD--- 179
            + C E   E LL  LA  +LD+++SD P+        +S+KLGE  +SFF+  ++    
Sbjct: 122 RITCREDKLERLLADLAIQRLDLVISDSPMPPHLDIKGYSQKLGECGVSFFATREMAERI 181

Query: 180 FAPFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAV 239
              FP  +    LL+PG  T +  ++ +WF  QG+QP I+GEFDDSALMKAF       V
Sbjct: 182 GTNFPQCMHGAPLLIPGQETVVRGRLMRWFAEQGIQPRIIGEFDDSALMKAFG-KSGSGV 240

Query: 240 FMAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           F+APS    EV  +  +++IGH D + E +Y I  ER ++HP V  + ++    LF
Sbjct: 241 FVAPSVIADEVQNQYGVQVIGHTDAVTESFYAITVERKVKHPGVVAIAESARNQLF 296