Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., transcriptional activator NhaR (RefSeq) from Shewanella amazonensis SB2B

 Score =  337 bits (863), Expect = 3e-97
 Identities = 165/295 (55%), Positives = 223/295 (75%), Gaps = 3/295 (1%)

Query: 1   MSHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEP 60
           M HLNYNHLYYFWMV  +GSV KAA+AL LTPQTVTGQI+ALEDRL G L KR GR +EP
Sbjct: 1   MQHLNYNHLYYFWMVQSKGSVVKAAEALCLTPQTVTGQIRALEDRLGGALFKRVGRQLEP 60

Query: 61  TELGQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
           T+LG+LVF+YAD+MF LSYE+LDI+NY + + +LF+VG+ADALSK L S++LL+ +P D 
Sbjct: 61  TDLGELVFRYADKMFNLSYELLDILNYRKDAAMLFEVGIADALSKALSSRVLLSVLPTDG 120

Query: 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDF 180
            + L C+E+THE L+ +L +HKLDMILSDC  +S + P + SKKLGE  +SFFS      
Sbjct: 121 SMRLACYEATHESLMARLREHKLDMILSDCAGESLKYPEILSKKLGECGVSFFS-SKTYT 179

Query: 181 APFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAVF 240
            PFPA L+  KLL+PG RT++G+++ +WF  + L+  ILGEFDD+A+MKAF  +    +F
Sbjct: 180 KPFPACLEEDKLLIPGKRTSLGQQLHRWFAEKNLEVRILGEFDDAAMMKAFGFF-GQGIF 238

Query: 241 MAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           +APS Y  ++     +++IG   +++EEY+V+FAERMIQHPAV+ + +  F +LF
Sbjct: 239 VAPSIYKQDI-LGHGMQVIGETRDVREEYHVMFAERMIQHPAVQRLLETRFDDLF 292