Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., putative HTH-type transcriptional regulator pcaQ from Phaeobacter inhibens DSM 17395

 Score = 60.1 bits (144), Expect = 6e-14
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 2   SHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEPT 61
           S L   HL  F  V ++ SVT+AA+ L +T   VT  ++ LE   +  L +++GR I  +
Sbjct: 5   SQLKLRHLEVFVEVARKMSVTQAAERLGMTQPAVTRALRELEAVCEKPLVEKHGRGIRLS 64

Query: 62  ELGQLVFKYADRMFGLS---YEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPG 118
             G++   YA R   L+    EML  ++ ++ S +   +G    +S  +V + L +    
Sbjct: 65  AYGEMFRDYAGRSLALTRDGVEMLRGLDAAEGSKV--TIGALPTVSATVVPEALASIWEQ 122

Query: 119 DNRIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGD- 177
             R         ++ LL+ L + +LD+++   P   +   GL    L   R++     D 
Sbjct: 123 GGRNRFSVMSGDNQYLLDLLRRGELDVVVGRLPAPENM-VGLDFDPLFRERVTVVVAPDH 181

Query: 178 ----VDFAPFPAVLQSK-KLLVPGSRTAMGRKVRQWFDRQGL-QPHILGEFDDSALMKAF 231
               +D A  P  L  K  +L+P   + +   V + F  QG+  P    E   S   + F
Sbjct: 182 PLTRLDAAQLPDALFGKYPVLMPPPASIIRSSVERMFLEQGIPMPDAAIETVSSTFGRQF 241

Query: 232 AIYH 235
            + H
Sbjct: 242 TLAH 245