Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., transcriptional activator NhaR (RefSeq) from Shewanella loihica PV-4

 Score =  361 bits (927), Expect = e-104
 Identities = 176/295 (59%), Positives = 230/295 (77%), Gaps = 3/295 (1%)

Query: 1   MSHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEP 60
           MSHLNYNHLYYFWMV K+GSV KAA+ L LTPQTVTGQI+ LE RL+G L KR GR++EP
Sbjct: 1   MSHLNYNHLYYFWMVHKKGSVAKAAETLCLTPQTVTGQIRVLEQRLNGTLFKRVGRNLEP 60

Query: 61  TELGQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
           TELG+LVF+YAD+MF LSYEMLDI+NY + +N+LF+VG+ADALSK L S++LL+ VP D 
Sbjct: 61  TELGELVFRYADKMFSLSYEMLDILNYQKDNNILFEVGIADALSKALASRVLLSVVPSDG 120

Query: 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDF 180
            +HL C+E+THE L+E+L  HKLDMILSDC  +S + P + SKKLGE  ++FFS    D 
Sbjct: 121 SMHLACYEATHESLMERLRAHKLDMILSDCAGESLKYPEILSKKLGECGVAFFSSTTYD- 179

Query: 181 APFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAVF 240
            PFPA L+  KLL+PG RT++G+++  WFD  GL   ILGEFDD+A+MKAF  +    +F
Sbjct: 180 KPFPACLEEGKLLIPGKRTSLGQQLHHWFDENGLDVTILGEFDDAAMMKAFGFF-KQGIF 238

Query: 241 MAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           +APS Y  ++ A   ++++G  D+IKE Y+V+FAERMIQHPAVK++ + DF++LF
Sbjct: 239 VAPSIYKQDILAH-DMQILGETDDIKEVYHVMFAERMIQHPAVKSLLETDFSDLF 292