Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., transcriptional regulator, LysR family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 84.0 bits (206), Expect = 4e-21
 Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 13/296 (4%)

Query: 1   MSHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEP 60
           M+ LNYNHL YFW V   G++T+ A  L L+   ++ QI+ LEDRL   L +R GR++  
Sbjct: 1   MADLNYNHLRYFWAVAHDGNLTRTAARLNLSQSALSVQIRKLEDRLGFALFERRGRALLL 60

Query: 61  TELGQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
           TE GQ+   +AD +F    +++  +  +     +  VG    LS+       L  + G  
Sbjct: 61  TEAGQIALDHADTIFAAGDDLVATLRETGARRQVLRVGAQSTLSRNF-QIAFLRPLLGRE 119

Query: 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFF---SFGD 177
            + +     T E LL  L     D++L++ P          +++LG  ++S     +   
Sbjct: 120 DVEVVLRSGTVEELLRGLDALNHDVLLTNQPPLQDAGTPYRAQELGAQQVSLIGTPARAQ 179

Query: 178 VDFAPFPAVLQSKKLLVPGSRTAMGRKVRQWFDR----QGLQPHILGEFDDSALMKAFAI 233
              A   A L++  +++P         +R  FD           I  E DD AL++  A 
Sbjct: 180 AGEASVEAHLRAHPVILP----LQSSLIRAGFDALTAGYDFPIRIAAEVDDMALLRLLAR 235

Query: 234 YHSDAVFMAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDA 289
                  + P     E+ +   ++L   +  ++E ++ +   R   +P + ++  A
Sbjct: 236 EDLGLAVLPPIVVRDELQSGELVEL-APLPALRETFFAVTRPRRFPNPLLADLLAA 290