Pairwise Alignments

Query, 296 a.a., transcriptional activator protein NhaR from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., transcriptional activator NhaR (RefSeq) from Shewanella sp. ANA-3

 Score =  349 bits (895), Expect = e-101
 Identities = 172/295 (58%), Positives = 227/295 (76%), Gaps = 3/295 (1%)

Query: 1   MSHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEP 60
           M HLNYNHLYYFWM+ K+GSV KAA+AL LTPQT+TGQI+ALEDRL+G L KR GR++E 
Sbjct: 1   MLHLNYNHLYYFWMIKKKGSVAKAAEALCLTPQTITGQIRALEDRLNGSLFKRVGRNLEA 60

Query: 61  TELGQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
           TELG+LVF+YAD+MF LSYEMLD++NY +   +LF+VG+ADALSK L S++LL+ VP D 
Sbjct: 61  TELGELVFRYADKMFSLSYEMLDLLNYQKDDAILFEVGIADALSKALASRVLLSVVPNDG 120

Query: 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDF 180
            +HL C+E+THE L+ +L +HKLDMILSDC  +S + P + SKKLGE  +SFFS  +   
Sbjct: 121 SMHLACYEATHESLMTRLREHKLDMILSDCAGESLKYPEILSKKLGECGVSFFS-AETYS 179

Query: 181 APFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAVF 240
           A FPA L+  +LL+PG RT++G+++ +WFD Q L+  ILGEFDD+A+MKAF  Y    +F
Sbjct: 180 ADFPACLEQGQLLIPGRRTSLGQQLYRWFDEQNLKVSILGEFDDAAMMKAFG-YLKRGIF 238

Query: 241 MAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
           + PS Y  EV     + L+G   ++KEEY+V+FAERMIQHPAVK + + DF++LF
Sbjct: 239 VTPSVYPQEV-ISHGMHLLGETLDVKEEYHVMFAERMIQHPAVKRLLETDFSDLF 292