Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  246 bits (628), Expect = 1e-69
 Identities = 145/373 (38%), Positives = 217/373 (58%), Gaps = 11/373 (2%)

Query: 76  SHKQVRWLAFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVW 135
           S     W+A + +  L    +  F+  +  DF T P   +++  T+G   GM +L  +  
Sbjct: 69  SRSGTEWIAVLNQEVLRLKNVGDFVCEWFFDFHTLPFDVSRVQVTLGRAFGMARLRGQGS 128

Query: 136 PHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQ 195
            H     +  L+G+S P++ LR  + ++ P +  +LI GESGTGKE VA+ +H  S R  
Sbjct: 129 IHIDQPEHQ-LLGDSKPIRELRKLLSKLAPAESPVLIRGESGTGKELVARTLHCQSHRRN 187

Query: 196 KPFISVNCRAMSEKRLESELFGLGE---TEEGQQPF--LLQADGGTLLLNDILTLPKSQQ 250
           KPFI++NC A+ E  ++SELFG  +   T   Q+    +  A GGTL L++I  LP   Q
Sbjct: 188 KPFIAINCGAIPEHLIQSELFGHEKGAFTGAHQRKIGRIEAAHGGTLFLDEIGDLPLELQ 247

Query: 251 LNLLRFLQEGTVETRQGVR--AVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVP 308
            NLLRFLQE  +E   G +  AVDVR+LAA   D+E A+    F E+LY+ +NVL++ + 
Sbjct: 248 ANLLRFLQEKHIERVGGSQPIAVDVRVLAATHVDLEAAIEHKRFREDLYYRLNVLQVVMA 307

Query: 309 SLKERASDIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVL 368
            L+ER  D+ +LA HF   YS+E   + RSFSDDA+  +  + WPGNVREL N+++R ++
Sbjct: 308 PLRERHGDLAMLASHFSHFYSQETGRRPRSFSDDALVAMGMHDWPGNVRELANRVRRGLV 367

Query: 369 MSDTVVLDESQLDLPKR---SDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVS 425
           +++   ++   L L      +    +L+  + R+ER AL  VL  HS  +S AA+ LGVS
Sbjct: 368 LAEGRQIEARDLGLASHQGVAAPMGTLEDYKTRAERQALSDVLNRHSDNLSVAARVLGVS 427

Query: 426 RATMYRLLNKHNL 438
           R T YRLL+KH +
Sbjct: 428 RPTFYRLLHKHQI 440