Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  194 bits (492), Expect = 7e-54
 Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 24/312 (7%)

Query: 143 NMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVN 202
           ++G+IG   PM+ L  +I+++ PTD ++LI GESGTGKE VA+A+H  S RA+ P ISVN
Sbjct: 141 DIGIIGHCAPMQDLFGKIRKVAPTDSNVLIQGESGTGKELVARALHNLSRRAKAPMISVN 200

Query: 203 CRAMSEKRLESELFGLGE-----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFL 257
           C A+ E  +ESELFG  +        G+   +  ADGGTL L++I  LP   Q  LLR L
Sbjct: 201 CAAIPETLIESELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLLRVL 260

Query: 258 QEGTVETRQGVRA--VDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERAS 315
           QEG +     V++  VDVR++AA   D++     G F E+LY+ ++V+ + +P L+ER S
Sbjct: 261 QEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKTGQFREDLYYRLHVIALKLPPLRERGS 320

Query: 316 DIVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDT--- 372
           D++ +AK FL    +   +    FS DA + +  Y WPGNVREL N I+R  ++S++   
Sbjct: 321 DVLEIAKAFLARQGERMGSDDLHFSRDAEQAIRHYSWPGNVRELENAIERAAILSESPEI 380

Query: 373 --------VVLDESQLDLPKRSDGRRSLKSIRERSERDAL-----LLVLESHSGQVST-A 418
                   + LDE   D  +     R + +  E +E  +L       VLE       T  
Sbjct: 381 DAELLGIDIELDELDDDFDEPLGSIRGIANSNEPTEDLSLEDYFQHFVLEHQDHMTETEL 440

Query: 419 AKELGVSRATMY 430
           A++LG+SR  ++
Sbjct: 441 ARKLGISRKCLW 452