Pairwise Alignments

Query, 444 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  190 bits (482), Expect = 9e-53
 Identities = 135/424 (31%), Positives = 216/424 (50%), Gaps = 16/424 (3%)

Query: 28  LEKVGWRCTQVADLRKADALFVETGPCIGIVDLSHDEFSLNGIANLVSSHKQVRWLAFIR 87
           LE  G+     A   +A+A+       +  +DL   E   NG+  L        W+  + 
Sbjct: 28  LEDRGYTVMTAASAAQAEAILQRQVFDLCFLDLRLGED--NGLDVLQQMRMLAPWMRVVI 85

Query: 88  EAQLSS-DTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKVWPHFGSAGNMG- 145
               S+ DT    +     D+   P    QL  +   QL + ++  ++    G       
Sbjct: 86  VTVHSAVDTAVDAMQAGAADYLLKPCSPEQLRLSAAKQLEVRQMAARLEALEGEIKQRSD 145

Query: 146 -LIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGKETVAKAIHKTSSRAQKPFISVNCR 204
            L   S  M  + +  +++  TD +ILI GESGTGK  +A+AIH  S R++K F+++NC 
Sbjct: 146 ALGSHSPAMMAVLETARQVADTDANILILGESGTGKGELARAIHTWSRRSKKAFVTINCP 205

Query: 205 AMSEKRLESELFGLGE-----TEEGQQPFLLQADGGTLLLNDILTLPKSQQLNLLRFLQE 259
           ++S   +ESELFG          E     + QADGGTL L++I   P + Q  LLRF+Q+
Sbjct: 206 SLSADLMESELFGHNRGAFTGATESTLGRVNQADGGTLFLDEIGDFPLALQPKLLRFIQD 265

Query: 260 GTVETRQG---VRAVDVRILAANSSDIEKALIDGDFNEELYHYINVLRINVPSLKERASD 316
              E R G    R  DVRILAA + ++E+ + +G F E+L + +NV+ +N+P ++ER  D
Sbjct: 266 KEYE-RVGDPVTRRADVRILAATNLNLEEMVREGKFREDLLYRLNVITLNLPPMRERPED 324

Query: 317 IVLLAKHFLQEYSKEYNAQARSFSDDAVRGLTRYHWPGNVRELMNQIKRVVLMSDTVVLD 376
           ++ LA+ FL  + K Y   AR FSD A+  L  Y WPGNVREL N ++R  ++    +++
Sbjct: 325 VLALAERFLASFVKNYGRPARGFSDAAIAALKTYRWPGNVRELRNVVERASIICPQQMIE 384

Query: 377 ESQLDLPKR--SDGRRSLKSIRERSERDALLLVLESHSGQVSTAAKELGVSRATMYRLLN 434
            S L L ++  S+  R  + +   +   A +  + S S  +  AA+ LG+  +T+YR   
Sbjct: 385 VSHLGLGEQVGSNAPRIGEPLSLEALEKAHIAGVLSTSDTLEQAARILGIDASTLYRKRK 444

Query: 435 KHNL 438
           ++ L
Sbjct: 445 QYGL 448